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Aliases for FAM83H-AS1 Gene

Subcategory (RNA class) for FAM83H-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM83H-AS1 Gene

  • FAM83H Antisense RNA 1 (Head To Head) 2 3
  • IQ Motif And Ankyrin Repeat Containing 1 5
  • Onco-LncRNA-3 3
  • IQANK1 5

External Ids for FAM83H-AS1 Gene

Previous GeneCards Identifiers for FAM83H-AS1 Gene

  • GC08P144818

Summaries for FAM83H-AS1 Gene

GeneCards Summary for FAM83H-AS1 Gene

FAM83H-AS1 (FAM83H Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FAM83H-AS1 include Colorectal Cancer and Lung Cancer.

Additional gene information for FAM83H-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83H-AS1 Gene

Genomics for FAM83H-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM83H-AS1 Gene

Promoters and enhancers for FAM83H-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J143731 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 17.1 +3.1 3108 11.1 HDGF PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A ZBTB7B E2F8 ZNF143 FAM83H ENSG00000254548 FAM83H-AS1 ENSG00000254973 PLEC MAPK15 MROH6 RHPN1 GC08P143741 IQANK1
GH08J143275 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.1 -455.1 -455066 6.5 HDGF PKNOX1 CLOCK SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 GLI4 MINCR ZNF623 GPAA1 PARP10 SHARPIN ENSG00000255050 ZNF707 ZFP41 EEF1D
GH08J143245 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 7 -487.3 -487299 2.8 PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 ZNF48 TCF12 POLR2B GLIS2 ZFP41 ENSG00000264668 MINCR SHARPIN ZNF707 LY6K GLI4 FAM83H-AS1 TOP1MT
GH08J143540 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 6.6 -192.7 -192731 2.2 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 POLR2B ZNF766 ZC3H3 RN7SKP175 GC08P143580 ENSG00000254144 ENSG00000254859 ZNF623 VPS28 CPSF1 GSDMD JRK
GH08J143826 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 4.4 +94.6 94606 3.6 FOXA2 PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B ZNF766 PUF60 RHPN1 FAM83H-AS1 NRBP2 SCRIB GC08M143801
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM83H-AS1 Gene

Genomic Locations for FAM83H-AS1 Gene
chr8:143,734,140-143,790,644
(GRCh38/hg38)
Size:
56,505 bases
Orientation:
Plus strand
chr8:144,816,310-144,828,507
(GRCh37/hg19)
Size:
12,198 bases
Orientation:
Plus strand

Genomic View for FAM83H-AS1 Gene

Genes around FAM83H-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83H-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83H-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83H-AS1 Gene

Proteins for FAM83H-AS1 Gene

  • Protein details for FAM83H-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTG1-A0A1B0GTG1_HUMAN
    Recommended name:
    IQ motif and ankyrin repeat-containing 1
    Protein Accession:
    A0A1B0GTG1

    Protein attributes for FAM83H-AS1 Gene

    Size:
    560 amino acids
    Molecular mass:
    63562 Da
    Quaternary structure:
    No Data Available
  • Protein details for FAM83H-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUK7-A0A1B0GUK7_HUMAN
    Recommended name:
    IQ motif and ankyrin repeat-containing 1
    Protein Accession:
    A0A1B0GUK7

    Protein attributes for FAM83H-AS1 Gene

    Size:
    91 amino acids
    Molecular mass:
    9439 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM83H-AS1 Gene

Post-translational modifications for FAM83H-AS1 Gene

No Post-translational modifications

Other Protein References for FAM83H-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM83H-AS1 Gene

Domains & Families for FAM83H-AS1 Gene

Gene Families for FAM83H-AS1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM83H-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM83H-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM83H-AS1 Gene

Function for FAM83H-AS1 Gene

Phenotypes From GWAS Catalog for FAM83H-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83H-AS1 Gene

Localization for FAM83H-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM83H-AS1 Gene

Pathways & Interactions for FAM83H-AS1 Gene

SuperPathways for FAM83H-AS1 Gene

No Data Available

Interacting Proteins for FAM83H-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83H-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83H-AS1 Gene

Drugs & Compounds for FAM83H-AS1 Gene

No Compound Related Data Available

Transcripts for FAM83H-AS1 Gene

mRNA/cDNA for FAM83H-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83H-AS1 Gene

No ASD Table

Relevant External Links for FAM83H-AS1 Gene

GeneLoc Exon Structure for
FAM83H-AS1
ECgene alternative splicing isoforms for
FAM83H-AS1

Expression for FAM83H-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM83H-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83H-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x11.3), Skin - Not Sun Exposed (Suprapubic) (x6.6), Skin - Sun Exposed (Lower leg) (x5.0), and Vagina (x4.8).
genes like me logo Genes that share expression patterns with FAM83H-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM83H-AS1 Gene

Orthologs for FAM83H-AS1 Gene

Evolution for FAM83H-AS1 Gene

ENSEMBL:
Gene Tree for FAM83H-AS1 (if available)
TreeFam:
Gene Tree for FAM83H-AS1 (if available)

No data available for Orthologs for FAM83H-AS1 Gene

Paralogs for FAM83H-AS1 Gene

No data available for Paralogs for FAM83H-AS1 Gene

Variants for FAM83H-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83H-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000012694 -- 143,740,364(+) C/T intron_variant
rs1000580037 -- 143,733,216(+) G/C/T upstream_transcript_variant
rs1001243814 -- 143,736,108(+) C/T intron_variant
rs1001293012 -- 143,735,845(+) C/T intron_variant
rs1001849388 -- 143,740,193(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM83H-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2738037 CNV deletion 23290073
esv3619116 CNV loss 21293372
nsv466007 CNV loss 19166990
nsv519816 CNV loss 19592680
nsv612893 CNV loss 21841781
nsv612895 CNV loss 21841781
nsv6441 CNV insertion 18451855

Additional Variant Information for FAM83H-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83H-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83H-AS1 Gene

Disorders for FAM83H-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for FAM83H-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM83H-AS1

genes like me logo Genes that share disorders with FAM83H-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM83H-AS1 Gene

Publications for FAM83H-AS1 Gene

  1. Overexpression of FAM83H-AS1 indicates poor patient survival and knockdown impairs cell proliferation and invasion via MET/EGFR signaling in lung cancer. (PMID: 28198463) Zhang J … Chen G (Scientific reports 2017) 2 3 58
  2. Identification of lncRNA FAM83H-AS1 as a novel prognostic marker in luminal subtype breast cancer. (PMID: 27895496) Yang F … Wang OC (OncoTargets and therapy 2016) 2 3 58
  3. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski CR … Maher CA (RNA biology 2015) 2 3 58
  4. lncRNA FAM83H-AS1 is associated with the prognosis of colorectal carcinoma and promotes cell proliferation by targeting the Notch signaling pathway. (PMID: 29434883) Lu S … Liu Z (Oncology letters 2018) 3 58
  5. Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer. (PMID: 25116943) White NM … Maher CA (Genome biology 2014) 3 58

Products for FAM83H-AS1 Gene

Sources for FAM83H-AS1 Gene

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