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Aliases for FAM83A-AS1 Gene

Subcategory (RNA class) for FAM83A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM83A-AS1 Gene

  • FAM83A Antisense RNA 1 2 3 5
  • HCC-Related HCC-C11_v3 3
  • HCCC11_v1 3
  • HCCC11_v2 3
  • HCCC11 3

External Ids for FAM83A-AS1 Gene

Previous GeneCards Identifiers for FAM83A-AS1 Gene

  • GC08M124215

Summaries for FAM83A-AS1 Gene

GeneCards Summary for FAM83A-AS1 Gene

FAM83A-AS1 (FAM83A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM83A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM83A-AS1 Gene

Genomics for FAM83A-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM83A-AS1 Gene

Promoters and enhancers for FAM83A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I123202 Enhancer 0.4 ENCODE 550.8 -0.2 -247 0.1 ZNF512B CREB1 FAM83A-AS1 MIR4663 FAM83A
GH08I123181 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 14 +19.4 19385 4.5 HDGF PKNOX1 SMAD1 ARNT NEUROD1 SIN3A ZBTB7B POLR2B ZNF766 CBX5 FAM83A ENSG00000253258 FAM91A1 DERL1 FAM83A-AS1 WDYHV1 ENSG00000253410
GH08I123178 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 11.4 +23.3 23318 2.7 PKNOX1 ATF1 ZNF280A TCF12 ZNF766 GATA2 ATF7 CAVIN1 NCOA1 ZNF592 FAM83A ENSG00000221461 GC08M123182 FAM83A-AS1 WDYHV1
GH08I123148 Enhancer 1 ENCODE dbSUPER 14.9 +53.5 53459 1.4 TAF9B INSM2 TCF12 FOS ATF7 CREM ZBTB2 ZEB2 MTA1 SMARCA4 FAM83A FAM83A-AS1 ENSG00000221461 ENSG00000253258 DERL1 TBC1D31 ENSG00000238901 ENSG00000253607 RNU6-875P MIR548AA1
GH08I123155 Enhancer 1.5 Ensembl ENCODE dbSUPER 8.6 +45.2 45231 3.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 PPARGC1A PIR54534 TRM-CAT1-1 FAM91A1 DERL1 FAM83A C8orf76 FAM83A-AS1 TBC1D31
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM83A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM83A-AS1 Gene

Genomic Locations for FAM83A-AS1 Gene
chr8:123,201,172-123,202,743
(GRCh38/hg38)
Size:
1,572 bases
Orientation:
Minus strand
chr8:124,213,412-124,214,983
(GRCh37/hg19)

Genomic View for FAM83A-AS1 Gene

Genes around FAM83A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM83A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM83A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM83A-AS1 Gene

Proteins for FAM83A-AS1 Gene

Post-translational modifications for FAM83A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM83A-AS1 Gene

Domains & Families for FAM83A-AS1 Gene

Suggested Antigen Peptide Sequences for FAM83A-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM83A-AS1 Gene

Function for FAM83A-AS1 Gene

Phenotypes From GWAS Catalog for FAM83A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM83A-AS1 Gene

Localization for FAM83A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM83A-AS1 Gene

Pathways & Interactions for FAM83A-AS1 Gene

SuperPathways for FAM83A-AS1 Gene

No Data Available

Interacting Proteins for FAM83A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM83A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM83A-AS1 Gene

Drugs & Compounds for FAM83A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM83A-AS1 Gene

mRNA/cDNA for FAM83A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM83A-AS1 Gene

No ASD Table

Relevant External Links for FAM83A-AS1 Gene

GeneLoc Exon Structure for
FAM83A-AS1
ECgene alternative splicing isoforms for
FAM83A-AS1

Expression for FAM83A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM83A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM83A-AS1 Gene

This gene is overexpressed in Liver (x19.4), Esophagus - Mucosa (x13.5), Vagina (x7.4), and Cervix - Ectocervix (x7.0).
genes like me logo Genes that share expression patterns with FAM83A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM83A-AS1 Gene

Orthologs for FAM83A-AS1 Gene

Evolution for FAM83A-AS1 Gene

ENSEMBL:
Gene Tree for FAM83A-AS1 (if available)
TreeFam:
Gene Tree for FAM83A-AS1 (if available)

No data available for Orthologs for FAM83A-AS1 Gene

Paralogs for FAM83A-AS1 Gene

No data available for Paralogs for FAM83A-AS1 Gene

Variants for FAM83A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM83A-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000874851 -- 123,201,488(-) G/A intron_variant
rs1002188052 -- 123,203,979(-) A/C upstream_transcript_variant
rs1002380062 -- 123,201,900(-) G/A non_coding_transcript_variant
rs1002787637 -- 123,202,371(-) C/G non_coding_transcript_variant
rs1002828230 -- 123,202,870(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM83A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1032827 CNV gain 25217958

Additional Variant Information for FAM83A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM83A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM83A-AS1 Gene

Disorders for FAM83A-AS1 Gene

Additional Disease Information for FAM83A-AS1

No disorders were found for FAM83A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM83A-AS1 Gene

Publications for FAM83A-AS1 Gene

No publications were found for FAM83A-AS1 Gene.

Products for FAM83A-AS1 Gene

Sources for FAM83A-AS1 Gene

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