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Aliases for FAM66E Gene

Subcategory (RNA class) for FAM66E Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM66E Gene

  • Family With Sequence Similarity 66 Member E 2 3 5
  • Family With Sequence Similarity 66, Member E 2

External Ids for FAM66E Gene

Previous GeneCards Identifiers for FAM66E Gene

  • GC08P012264
  • GC08U900739
  • GC08M007167
  • GC08P007851

Summaries for FAM66E Gene

GeneCards Summary for FAM66E Gene

FAM66E (Family With Sequence Similarity 66 Member E) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM66E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM66E Gene

Genomics for FAM66E Gene

GeneHancer (GH) Regulatory Elements for FAM66E Gene

Promoters and enhancers for FAM66E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I007954 Promoter 0.5 Ensembl 550.8 +0.3 287 1 FAM66E LOC392187
GH08I008285 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 22.4 +333.4 333437 5.3 PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 IRF4 ZNF766 FAM86B3P FAM66B OR7E154P FAM66E FAM90A11P FAM90A12P FAM90A20P ALG1L13P PRAG1
GH08I008701 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.6 +747.0 746961 1.9 ATF1 ZFP64 ARID4B SIN3A ZNF48 GLIS2 ZNF213 ELK1 ZNF143 ATF7 CLDN23 GC08P008703 FAM86B3P OR7E154P FAM66E FAM90A12P
GH08I008867 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.6 +916.3 916288 6.6 PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 ZNF213 KLF13 MXD4 FAM86B3P FAM90A11P TNKS FAM66E ERI1 MFHAS1 ENSG00000254367
GH08I007973 Promoter 0.5 EPDnew 0.4 +18.3 18349 0.1 USP17L8 USP17L3 FAM66E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM66E on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM66E Gene

Genomic Locations for FAM66E Gene
chr8:7,955,013-8,008,755
(GRCh38/hg38)
Size:
53,743 bases
Orientation:
Plus strand
chr8:7,812,535-7,866,277
(GRCh37/hg19)

Genomic View for FAM66E Gene

Genes around FAM66E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66E Gene

Proteins for FAM66E Gene

  • Protein details for FAM66E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C841-FA66E_HUMAN
    Recommended name:
    Putative protein FAM66E
    Protein Accession:
    P0C841

    Protein attributes for FAM66E Gene

    Size:
    47 amino acids
    Molecular mass:
    5233 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM66E Gene

Post-translational modifications for FAM66E Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66E Gene

Domains & Families for FAM66E Gene

Protein Domains for FAM66E Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM66E Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C841

UniProtKB/Swiss-Prot:

FA66E_HUMAN :
  • Belongs to the FAM66 family.
Family:
  • Belongs to the FAM66 family.
genes like me logo Genes that share domains with FAM66E: view

No data available for Gene Families for FAM66E Gene

Function for FAM66E Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66E Gene

Localization for FAM66E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66E Gene

Pathways & Interactions for FAM66E Gene

SuperPathways for FAM66E Gene

No Data Available

Interacting Proteins for FAM66E Gene

Gene Ontology (GO) - Biological Process for FAM66E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66E Gene

Drugs & Compounds for FAM66E Gene

No Compound Related Data Available

Transcripts for FAM66E Gene

mRNA/cDNA for FAM66E Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66E Gene

No ASD Table

Relevant External Links for FAM66E Gene

GeneLoc Exon Structure for
FAM66E
ECgene alternative splicing isoforms for
FAM66E

Expression for FAM66E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66E Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66E Gene:

FAM66E
genes like me logo Genes that share expression patterns with FAM66E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66E Gene

Orthologs for FAM66E Gene

Evolution for FAM66E Gene

ENSEMBL:
Gene Tree for FAM66E (if available)
TreeFam:
Gene Tree for FAM66E (if available)

No data available for Orthologs for FAM66E Gene

Paralogs for FAM66E Gene

No data available for Paralogs for FAM66E Gene

Variants for FAM66E Gene

Sequence variations from dbSNP and Humsavar for FAM66E Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000534991 -- 7,963,981(+) A/G intron_variant
rs1000991481 -- 8,007,122(+) A/G intron_variant
rs1001491049 -- 7,957,975(+) CACA/CA intron_variant
rs1001654921 -- 7,985,365(+) G/T intron_variant
rs1001689218 -- 7,985,582(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66E Gene

Variant ID Type Subtype PubMed ID
dgv6990n100 CNV loss 25217958
dgv6991n100 CNV loss 25217958
dgv6989n100 CNV gain 25217958
dgv6988n100 CNV loss 25217958
dgv6987n100 CNV loss 25217958
dgv6986n100 CNV loss 25217958
dgv6984n100 CNV gain+loss 25217958
dgv6983n100 CNV loss 25217958
dgv6980n100 CNV gain 25217958
dgv6978n100 CNV loss 25217958
dgv6977n100 CNV gain 25217958
dgv6976n100 CNV loss 25217958
dgv6972n100 CNV loss 25217958
dgv6970n100 CNV gain 25217958
dgv6964n100 CNV gain 25217958
dgv6963n100 CNV loss 25217958
dgv6962n100 CNV gain 25217958
dgv6955n100 CNV gain 25217958
dgv6950n100 CNV loss 25217958
dgv6949n100 CNV gain 25217958
dgv6940n100 CNV loss 25217958
dgv6936n100 CNV gain+loss 25217958
dgv6935n100 CNV gain 25217958
dgv6915n100 CNV gain 25217958
dgv6912n100 CNV loss 25217958
dgv6911n100 CNV loss 25217958
dgv6910n100 CNV gain+loss 25217958
dgv6909n100 CNV gain 25217958
dgv6896n100 CNV gain+loss 25217958
dgv6895n100 CNV loss 25217958
dgv6890n100 CNV gain 25217958
dgv6887n100 CNV loss 25217958
dgv6882n100 CNV gain 25217958
dgv3764n106 CNV deletion 24896259
dgv262n111 CNV deletion 26073780
dgv2035e212 CNV gain 25503493
dgv13n29 CNV gain+loss 16826518
dgv1265e199 CNV deletion 23128226
dgv11931n54 CNV loss 21841781
dgv11930n54 CNV gain 21841781
dgv11928n54 CNV gain 21841781
dgv11914n54 CNV gain 21841781
nsv971282 CNV duplication 23825009
nsv967563 CNV duplication 23825009
nsv967562 CNV duplication 23825009
nsv967561 CNV duplication 23825009
nsv951093 CNV deletion 24416366
nsv8281 CNV gain+loss 18304495
nsv821656 CNV gain 15273396
nsv821327 CNV deletion 20802225
nsv610140 CNV loss 21841781
nsv610137 CNV loss 21841781
nsv515968 CNV gain+loss 19592680
nsv515104 CNV gain 21397061
nsv510977 OTHER complex 20534489
nsv508496 CNV deletion 20534489
nsv471651 CNV gain+loss 15918152
nsv471650 CNV gain+loss 15918152
nsv469790 CNV loss 16826518
nsv442400 CNV loss 18776908
nsv433398 CNV gain 18776910
nsv428194 CNV gain+loss 18775914
nsv1161716 CNV duplication 26073780
nsv1075524 CNV deletion 25765185
nsv1075106 CNV deletion 25765185
nsv1031577 CNV gain 25217958
nsv1030619 CNV loss 25217958
nsv1027782 CNV loss 25217958
nsv1022975 CNV loss 25217958
nsv1020728 CNV gain+loss 25217958
nsv1018143 CNV gain+loss 25217958
nsv1017081 CNV gain 25217958
nsv1016847 CNV gain 25217958
nsv1015205 CNV gain+loss 25217958
esv3891321 CNV gain+loss 25118596
esv3891318 CNV gain 25118596
esv2764098 CNV gain+loss 21179565
esv2761169 CNV gain+loss 21179565
esv2759589 CNV gain+loss 17122850
esv2752266 CNV loss 17911159
esv2752265 CNV gain 17911159
esv25631 CNV gain+loss 19812545
esv2422039 CNV deletion 20811451
esv1000987 CNV gain 20482838
dgv6992n100 CNV gain 25217958

Additional Variant Information for FAM66E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66E Gene

Disorders for FAM66E Gene

Additional Disease Information for FAM66E

No disorders were found for FAM66E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66E Gene

Publications for FAM66E Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. (PMID: 28065597) Yao Z … Stagljar I (Molecular cell 2017) 3 58

Products for FAM66E Gene

Sources for FAM66E Gene

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