Aliases for FAM66D Gene

Data sources for FAM66D Gene:

RNA type for FAM66D Gene

lncRNA

Aliases for FAM66D Gene

External Ids for FAM66D Gene

Previous GeneCards Identifiers for FAM66D Gene

  • GC08U900597
  • GC08P012017
  • GC08P011974

Summaries for FAM66D Gene

GeneCards Summary for FAM66D Gene

FAM66D (Family With Sequence Similarity 66 Member D) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM66D include Inflammatory Bowel Disease 26 and Multisystem Inflammatory Syndrome In Children.

Additional gene information for FAM66D Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM66D Gene

Genomics for FAM66D Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM66D Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM66D on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FAM66D gene promoter:
  • POU2F1
  • POU2F1a
  • POU3F2

Genomic Locations for FAM66D Gene

Latest Assembly
chr8:12,115,765-12,177,550
(GRCh38/hg38)
Size:
61,786 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,973,291-12,008,698
(GRCh37/hg19 by Entrez Gene)
Size:
35,408 bases
Orientation:
Plus strand

chr8:11,973,291-12,008,698
(GRCh37/hg19 by Ensembl)
Size:
35,408 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(ALT_REF_LOCI_1):38,931-39,635 (-)

Genomic View for FAM66D Gene

Genes around FAM66D on UCSC Golden Path with GeneCards custom track
FAM66D in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM66D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66D Gene

Proteins for FAM66D Gene

Post-translational modifications for FAM66D Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66D Gene

Domains & Families for FAM66D Gene

Gene Families for FAM66D Gene

genes like me logo Genes that share domains with FAM66D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM66D Gene

Function for FAM66D Gene

Phenotypes From GWAS Catalog for FAM66D Gene

Phenotypes for FAM66D Gene

genes like me logo Genes that share phenotypes with FAM66D: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66D Gene

Localization for FAM66D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66D Gene

Pathways & Interactions for FAM66D Gene

PathCards logo

SuperPathways for FAM66D Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM66D Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM66D Gene

Drugs & Compounds for FAM66D Gene

No Compound Related Data Available

Transcripts for FAM66D Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM66D Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075BC0D_9606 lncRNA 1071 3

RefSeq: NR_027425,

LNCipedia: lnc-ZNF705D-2:22,

NONCODE: NONHSAT125114.2,

URS000076260F_9606 lncRNA 918 3

Ensembl: ENST00000434078 (view in UCSC) ,

LNCipedia: lnc-ZNF705D-2:24,

NONCODE: NONHSAT215434.1,

URS0000EF6A43_9606 lncRNA 4129 1

Ensembl: ENST00000653725 (view in UCSC) ,

URS0000EEEE92_9606 lncRNA 4089 1

Ensembl: ENST00000666028 (view in UCSC) ,

URS0000EF3468_9606 lncRNA 4076 1

Ensembl: ENST00000666566 (view in UCSC) ,

FAM66D in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM66D Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66D Gene

No ASD Table

Relevant External Links for FAM66D Gene

GeneLoc Exon Structure for
FAM66D

Expression for FAM66D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM66D Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM66D

SOURCE GeneReport for Unigene cluster for FAM66D Gene:

Hs.546711
genes like me logo Genes that share expression patterns with FAM66D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66D Gene

Orthologs for FAM66D Gene

Evolution for FAM66D Gene

ENSEMBL:
Gene Tree for FAM66D (if available)
TreeFam:
Gene Tree for FAM66D (if available)
Alliance of Genome Resources:
Additional Orthologs for FAM66D

No data available for Orthologs for FAM66D Gene

Paralogs for FAM66D Gene

No data available for Paralogs for FAM66D Gene

Variants for FAM66D Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for FAM66D Gene

SNP ID Clinical significance and condition Chr 08 pos Variation AA Info Type
rs74614551 Likely Benign: not provided 12,137,975(+) C/T
NM_201402.2(USP17L2):c.786G>A (p.Pro262=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM66D Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FAM66D Gene

Variant ID Type Subtype PubMed ID
dgv11959n54 CNV loss 21841781
dgv11960n54 CNV gain 21841781
dgv11961n54 CNV loss 21841781
dgv11962n54 CNV loss 21841781
dgv11963n54 CNV loss 21841781
dgv11964n54 CNV loss 21841781
dgv11965n54 CNV loss 21841781
dgv11966n54 CNV loss 21841781
dgv1270e199 CNV deletion 23128226
dgv1375e214 CNV gain 21293372
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv27n31 CNV gain 19718026
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
esv1009029 CNV gain 20482838
esv22986 CNV gain+loss 19812545
esv2550155 CNV deletion 19546169
esv2660145 CNV deletion 23128226
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv3343116 CNV duplication 20981092
esv3344144 CNV duplication 20981092
esv3440369 CNV duplication 20981092
esv3447577 CNV duplication 20981092
esv3584578 CNV gain 24956385
esv3616267 CNV loss 21293372
nsv1034132 CNV gain 25217958
nsv1077517 CNV duplication 25765185
nsv1110510 CNV duplication 24896259
nsv1122187 CNV deletion 24896259
nsv1139930 CNV duplication 24896259
nsv1161718 OTHER complex 26073780
nsv428195 CNV gain 18775914
nsv442420 CNV gain+loss 18776908
nsv471462 CNV gain 19718026
nsv515060 CNV gain 21397061
nsv516685 CNV gain+loss 19592680
nsv610297 CNV gain 21841781
nsv610309 CNV loss 21841781
nsv610313 CNV loss 21841781
nsv610317 CNV loss 21841781
nsv610319 CNV loss 21841781
nsv8288 CNV gain+loss 18304495
nsv951104 CNV deletion 24416366
nsv967564 CNV duplication 23825009
nsv981912 CNV duplication 23825009

Additional Variant Information for FAM66D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66D
Leiden Open Variation Database (LOVD)
FAM66D

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66D Gene

Disorders for FAM66D Gene

MalaCards: The human disease database

(2) MalaCards diseases for FAM66D Gene - From: COP

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM66D

genes like me logo Genes that share disorders with FAM66D: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM66D Gene

Publications for FAM66D Gene

No publications were found for FAM66D Gene.

Products for FAM66D Gene

Sources for FAM66D Gene