Aliases for FAM66C Gene

Subcategory (RNA class) for FAM66C Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for FAM66C Gene

  • Family With Sequence Similarity 66 Member C 2 3 5
  • FAM66C 2 170
  • Family With Sequence Similarity 66, Member C 2
  • HSALNG0089050 169

External Ids for FAM66C Gene

Previous GeneCards Identifiers for FAM66C Gene

  • GC12P008225
  • GC12P008333

Summaries for FAM66C Gene

GeneCards Summary for FAM66C Gene

FAM66C (Family With Sequence Similarity 66 Member C) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM66C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM66C Gene

Genomics for FAM66C Gene

GeneHancer (GH) Regulatory Elements for FAM66C Gene

Promoters and enhancers for FAM66C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J008179 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 761.5 +0.4 404 2 CTCF POLR2A SP7 ZNF687 GLIS2 ZIC2 REST ZBTB8A NRF1 ZNF143 FAM66C CLEC4A piR-43099-101 ZNF705A
GH12J007969 Promoter/Enhancer 1.9 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 21.8 -209.4 -209396 2.7 POLR2A HDAC2 ZNF362 MYC CC2D1A L3MBTL2 MAX ZNF121 POU5F1 MNT lnc-SLC2A3-4 FAM66C SLC2A3 FOXJ2 DEFB109F LINC02449 RIMKLB NECAP1 PHC1 M6PR
GH12J007858 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -319.7 -319719 3.4 CTCF ZNF362 CC2D1A RAD21 ZNF280D SP7 ZSCAN21 PRDM1 ZNF404 EGR1 ENSG00000241828 RPS20P29 lnc-NANOG-2 NANOGP1 SLC2A14 ENSG00000255356 LRRC23 DEFB109F FAM66C ATN1
GH12J008155 Enhancer 1 FANTOM5 Ensembl ENCODE 9.1 -24.0 -24008 5.2 MAFK SMARCA4 ZNF639 IKZF1 POLR2A PKNOX1 ZNF316 ZNF24 NFE2 ZBTB20 ZNF705A CLEC4A CLEC4E C3AR1 FAM66C CLEC6A NECAP1 POU5F1P3 CLEC4D piR-60885-023
GH12J008197 Enhancer 0.6 Ensembl ENCODE 13.1 +17.9 17943 1.7 ZIC2 ZFHX2 CEBPG ATF7 FAM66C ENSG00000276417 piR-31534-105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM66C on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM66C Gene

Genomic Locations for FAM66C Gene
chr12:8,180,209-8,226,451
(GRCh38/hg38)
Size:
46,243 bases
Orientation:
Plus strand
chr12:8,332,805-8,368,747
(GRCh37/hg19)
Size:
35,943 bases
Orientation:
Plus strand

Genomic View for FAM66C Gene

Genes around FAM66C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66C Gene

Proteins for FAM66C Gene

Post-translational modifications for FAM66C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66C Gene

Domains & Families for FAM66C Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM66C Gene

Function for FAM66C Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66C Gene

Localization for FAM66C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66C Gene

Pathways & Interactions for FAM66C Gene

PathCards logo

SuperPathways for FAM66C Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM66C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM66C Gene

Drugs & Compounds for FAM66C Gene

No Compound Related Data Available

Transcripts for FAM66C Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66C Gene

No ASD Table

Relevant External Links for FAM66C Gene

GeneLoc Exon Structure for
FAM66C
ECgene alternative splicing isoforms for
FAM66C

Expression for FAM66C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM66C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM66C Gene:

FAM66C

SOURCE GeneReport for Unigene cluster for FAM66C Gene:

Hs.512257
genes like me logo Genes that share expression patterns with FAM66C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66C Gene

Orthologs for FAM66C Gene

Evolution for FAM66C Gene

ENSEMBL:
Gene Tree for FAM66C (if available)
TreeFam:
Gene Tree for FAM66C (if available)

No data available for Orthologs for FAM66C Gene

Paralogs for FAM66C Gene

No data available for Paralogs for FAM66C Gene

Variants for FAM66C Gene

Sequence variations from dbSNP and Humsavar for FAM66C Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000249236 -- 8,190,845(+) A/G intron_variant
rs1000612855 -- 8,191,201(+) T/C intron_variant
rs1000741413 -- 8,183,726(+) C/G/T intron_variant
rs1001179569 -- 8,183,994(+) G/A/T intron_variant
rs1001293651 -- 8,197,086(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM66C Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
esv1273398 CNV insertion 17803354
esv2759877 CNV gain+loss 17122850
esv29886 CNV gain+loss 19812545
nsv1159957 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv826226 CNV gain 20364138
nsv8899 CNV gain+loss 18304495
nsv976564 CNV duplication 23825009
nsv983270 CNV duplication 23825009

Additional Variant Information for FAM66C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM66C Gene

Disorders for FAM66C Gene

Additional Disease Information for FAM66C

No disorders were found for FAM66C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66C Gene

Publications for FAM66C Gene

  1. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y … Tatakis DN (Journal of clinical periodontology 2017) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for FAM66C Gene

Sources for FAM66C Gene