Aliases for FAM66C Gene

Subcategory (RNA class) for FAM66C Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for FAM66C Gene

  • Family With Sequence Similarity 66 Member C 2 3 5
  • FAM66C 2 168
  • Family With Sequence Similarity 66, Member C 2
  • HSALNG0089050 167

External Ids for FAM66C Gene

Previous GeneCards Identifiers for FAM66C Gene

  • GC12P008225
  • GC12P008333

Summaries for FAM66C Gene

GeneCards Summary for FAM66C Gene

FAM66C (Family With Sequence Similarity 66 Member C) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM66C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM66C Gene

Genomics for FAM66C Gene

GeneHancer (GH) Regulatory Elements for FAM66C Gene

Promoters and enhancers for FAM66C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J008179 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 511.6 +0.4 404 2 CTCF NRF1 PHF8 ZFX ZNF10 ZIC2 ZNF423 ZBTB26 REST KLF7 FAM66C CLEC4A LINC00612 piR-43099-101 ZNF705A
GH12J007858 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -319.7 -319719 3.4 CTCF ZSCAN5C JUND TEAD4 FOS ZNF639 ZNF10 ZIC2 REST RFX1 ENSG00000241828 RPS20P29 lnc-NANOG-2 NANOGP1 SLC2A14 ENSG00000255356 LRRC23 DEFB109F FAM66C CLEC4E
GH12J007948 Enhancer 0.9 Ensembl ENCODE dbSUPER 15.2 -230.7 -230708 7.4 HNRNPK ZNF316 ZNF426 SPI1 NFE2 BCOR ZNF34 ZC3H11A ZBTB33 ZNF781 FAM66C PHC1 EMG1 DEFB109F RIMKLB SLC2A14 CLEC6A C1RL-AS1 ENSG00000288043 SLC2A3
GH12J008155 Enhancer 1.1 FANTOM5 Ensembl ENCODE 9.2 -24.0 -24008 5.2 ZSCAN5C ZNF316 ZNF592 SPI1 NFE2 FOS JUND ZNF589 MAFK MAFG ZNF705A CLEC4A CLEC4E C3AR1 FAM66C CLEC6A NECAP1 POU5F1P3 CLEC4D piR-60885-023
GH12J008197 Enhancer 0.7 Ensembl ENCODE 13.1 +17.9 17943 1.7 ZIC2 ZFHX2 CEBPG ATF4 ATF3 ATF7 CEBPB FAM66C ENSG00000276417 piR-31534-105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM66C on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM66C Gene

Genomic Locations for FAM66C Gene
chr12:8,180,209-8,226,451
(GRCh38/hg38)
Size:
46,243 bases
Orientation:
Plus strand
chr12:8,332,805-8,368,747
(GRCh37/hg19)
Size:
35,943 bases
Orientation:
Plus strand

Genomic View for FAM66C Gene

Genes around FAM66C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM66C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66C Gene

Proteins for FAM66C Gene

Post-translational modifications for FAM66C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66C Gene

Domains & Families for FAM66C Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM66C Gene

Function for FAM66C Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66C Gene

Localization for FAM66C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66C Gene

Pathways & Interactions for FAM66C Gene

PathCards logo

SuperPathways for FAM66C Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FAM66C Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM66C Gene

Drugs & Compounds for FAM66C Gene

No Compound Related Data Available

Transcripts for FAM66C Gene

mRNA/cDNA for FAM66C Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 LncBook transcripts :
5 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66C Gene

No ASD Table

Relevant External Links for FAM66C Gene

GeneLoc Exon Structure for
FAM66C

Expression for FAM66C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM66C Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM66C

SOURCE GeneReport for Unigene cluster for FAM66C Gene:

Hs.512257
genes like me logo Genes that share expression patterns with FAM66C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66C Gene

Orthologs for FAM66C Gene

Evolution for FAM66C Gene

ENSEMBL:
Gene Tree for FAM66C (if available)
TreeFam:
Gene Tree for FAM66C (if available)

No data available for Orthologs for FAM66C Gene

Paralogs for FAM66C Gene

No data available for Paralogs for FAM66C Gene

Variants for FAM66C Gene

Additional dbSNP identifiers (rs#s) for FAM66C Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM66C Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
esv1273398 CNV insertion 17803354
esv2759877 CNV gain+loss 17122850
esv29886 CNV gain+loss 19812545
nsv1159957 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv826226 CNV gain 20364138
nsv8899 CNV gain+loss 18304495
nsv976564 CNV duplication 23825009
nsv983270 CNV duplication 23825009

Additional Variant Information for FAM66C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM66C Gene

Disorders for FAM66C Gene

Additional Disease Information for FAM66C

No disorders were found for FAM66C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM66C Gene

Publications for FAM66C Gene

  1. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y … Tatakis DN (Journal of clinical periodontology 2017) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for FAM66C Gene

Sources for FAM66C Gene