Aliases for FAM66A Gene

Data sources for FAM66A Gene:

RNA type for FAM66A Gene

lncRNA

Aliases for FAM66A Gene

External Ids for FAM66A Gene

Previous GeneCards Identifiers for FAM66A Gene

  • GC08U900595
  • GC08P012266
  • GC08P012219
  • GC08P010909

Summaries for FAM66A Gene

GeneCards Summary for FAM66A Gene

FAM66A (Family With Sequence Similarity 66 Member A) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM66A include Ovarian Carcinosarcoma.

Additional gene information for FAM66A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM66A Gene

Genomics for FAM66A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM66A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM66A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FAM66A gene promoter:
  • POU2F1
  • POU2F1a
  • POU3F2

Genomic Locations for FAM66A Gene

Latest Assembly
chr8:12,362,017-12,422,459
(GRCh38/hg38)
Size:
60,443 bases
Orientation:
Plus strand

Previous Assembly
chr8:12,219,528-12,268,510
(GRCh37/hg19 by Entrez Gene)
Size:
48,983 bases
Orientation:
Plus strand

chr8:12,219,527-12,268,510
(GRCh37/hg19 by Ensembl)
Size:
48,984 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,177,436-1,226,465 (-)

Genomic View for FAM66A Gene

Genes around FAM66A on UCSC Golden Path with GeneCards custom track
FAM66A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM66A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM66A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM66A Gene

Proteins for FAM66A Gene

Post-translational modifications for FAM66A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM66A Gene

Domains & Families for FAM66A Gene

Gene Families for FAM66A Gene

genes like me logo Genes that share domains with FAM66A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM66A Gene

Function for FAM66A Gene

Phenotypes From GWAS Catalog for FAM66A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM66A Gene

Localization for FAM66A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM66A Gene

Pathways & Interactions for FAM66A Gene

PathCards logo

SuperPathways for FAM66A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM66A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM66A Gene

Drugs & Compounds for FAM66A Gene

No Compound Related Data Available

Transcripts for FAM66A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM66A Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007DCD50_9606 lncRNA 552 4

Ensembl: ENST00000602658 (view in UCSC) ,

LncBook: HSALNT0133192,

LNCipedia: lnc-ZNF705D-2:46,

NONCODE: NONHSAT125137.2,

URS00007E0E74_9606 lncRNA 923 3

Ensembl: ENST00000525829 (view in UCSC) ,

LNCipedia: lnc-ZNF705D-2:43,

NONCODE: NONHSAT125135.2,

URS000075E73C_9606 lncRNA 780 2

RefSeq: NR_026789,

LNCipedia: lnc-ZNF705D-2:44,

URS00008B407A_9606 lncRNA 2646 3

LncBook: HSALNT0133185,

LNCipedia: lnc-ZNF705D-2:39,

NONCODE: NONHSAT125127.2,

URS00008BCB4F_9606 lncRNA 569 3

LncBook: HSALNT0133194,

LNCipedia: lnc-ZNF705D-2:47,

NONCODE: NONHSAT125138.2,

FAM66A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM66A Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM66A Gene

No ASD Table

Relevant External Links for FAM66A Gene

GeneLoc Exon Structure for
FAM66A

Expression for FAM66A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM66A Gene

genes like me logo Genes that share expression patterns with FAM66A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM66A Gene

Orthologs for FAM66A Gene

Evolution for FAM66A Gene

ENSEMBL:
Gene Tree for FAM66A (if available)
TreeFam:
Gene Tree for FAM66A (if available)
Alliance of Genome Resources:
Additional Orthologs for FAM66A

No data available for Orthologs for FAM66A Gene

Paralogs for FAM66A Gene

No data available for Paralogs for FAM66A Gene

Variants for FAM66A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM66A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FAM66A Gene

Variant ID Type Subtype PubMed ID
dgv1172n67 CNV gain 20364138
dgv11967n54 CNV gain 21841781
dgv11968n54 CNV gain 21841781
dgv11969n54 CNV loss 21841781
dgv11970n54 CNV loss 21841781
dgv11971n54 CNV loss 21841781
dgv11972n54 CNV loss 21841781
dgv11973n54 CNV loss 21841781
dgv11974n54 CNV loss 21841781
dgv11975n54 CNV loss 21841781
dgv11976n54 CNV loss 21841781
dgv11977n54 CNV loss 21841781
dgv11978n54 CNV loss 21841781
dgv11979n54 CNV loss 21841781
dgv11980n54 CNV loss 21841781
dgv11981n54 CNV loss 21841781
dgv11982n54 CNV loss 21841781
dgv11983n54 CNV loss 21841781
dgv11984n54 CNV loss 21841781
dgv11985n54 CNV loss 21841781
dgv11986n54 CNV loss 21841781
dgv11987n54 CNV loss 21841781
dgv1270e199 CNV deletion 23128226
dgv1376e214 CNV gain 21293372
dgv140n17 CNV loss 16327808
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv245e55 CNV gain 17911159
dgv246e55 CNV gain 17911159
dgv263n111 CNV deletion 26073780
dgv264n111 CNV duplication 26073780
dgv3775n106 CNV deletion 24896259
dgv4082e59 CNV duplication 20981092
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
dgv7029n100 CNV gain+loss 25217958
dgv7030n100 CNV gain 25217958
dgv7031n100 CNV loss 25217958
dgv7032n100 CNV gain 25217958
dgv7033n100 CNV gain 25217958
dgv7034n100 CNV gain+loss 25217958
dgv7035n100 CNV loss 25217958
dgv7036n100 CNV gain 25217958
dgv7037n100 CNV loss 25217958
dgv7038n100 CNV loss 25217958
dgv7039n100 CNV gain+loss 25217958
dgv7040n100 CNV gain 25217958
dgv7041n100 CNV gain+loss 25217958
dgv7042n100 CNV loss 25217958
dgv7043n100 CNV gain 25217958
dgv7044n100 CNV loss 25217958
dgv7045n100 CNV gain+loss 25217958
dgv7046n100 CNV gain+loss 25217958
dgv7047n100 CNV gain+loss 25217958
dgv7048n100 CNV loss 25217958
dgv7049n100 CNV gain 25217958
dgv7050n100 CNV gain+loss 25217958
dgv7051n100 CNV gain 25217958
dgv7052n100 CNV gain+loss 25217958
dgv7053n100 CNV loss 25217958
dgv7054n100 CNV gain 25217958
dgv7055n100 CNV gain+loss 25217958
dgv7056n100 CNV gain 25217958
dgv7057n100 CNV loss 25217958
dgv7058n100 CNV loss 25217958
dgv7059n100 CNV loss 25217958
dgv7060n100 CNV loss 25217958
dgv7061n100 CNV loss 25217958
dgv7062n100 CNV loss 25217958
dgv7063n100 CNV gain+loss 25217958
dgv7064n100 CNV loss 25217958
dgv7065n100 CNV gain+loss 25217958
dgv7066n100 CNV gain 25217958
dgv7067n100 CNV loss 25217958
dgv7068n100 CNV gain+loss 25217958
dgv7069n100 CNV loss 25217958
dgv7070n100 CNV gain+loss 25217958
dgv7071n100 CNV gain 25217958
dgv7072n100 CNV loss 25217958
esv2276035 CNV deletion 18987734
esv25198 CNV gain+loss 19812545
esv2672709 CNV deletion 23128226
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv32998 CNV gain+loss 17666407
esv3336423 CNV duplication 20981092
esv3362477 CNV duplication 20981092
esv3403420 CNV duplication 20981092
esv3436982 CNV duplication 20981092
esv3543070 CNV deletion 23714750
esv3616273 CNV loss 21293372
esv3616274 CNV loss 21293372
esv3891340 CNV loss 25118596
esv3891341 CNV gain 25118596
esv993011 CNV gain 20482838
nsv1019015 CNV gain 25217958
nsv1020906 CNV loss 25217958
nsv1029157 CNV gain 25217958
nsv1032062 CNV gain 25217958
nsv1032173 CNV loss 25217958
nsv1032729 CNV gain+loss 25217958
nsv1032964 CNV gain 25217958
nsv1034659 CNV loss 25217958
nsv1075112 CNV deletion 25765185
nsv1076059 CNV deletion 25765185
nsv1078046 CNV duplication 25765185
nsv1115781 CNV duplication 24896259
nsv1161719 CNV deletion 26073780
nsv1161723 CNV duplication 26073780
nsv428195 CNV gain 18775914
nsv438036 CNV loss 16468122
nsv442421 CNV gain+loss 18776908
nsv469553 CNV loss 16826518
nsv471652 CNV gain+loss 15918152
nsv511387 CNV loss 21212237
nsv515064 CNV gain+loss 21397061
nsv515065 CNV gain 21397061
nsv515066 CNV gain+loss 21397061
nsv516685 CNV gain+loss 19592680
nsv610383 CNV loss 21841781
nsv610390 CNV loss 21841781
nsv610392 CNV loss 21841781
nsv821220 CNV deletion 20802225
nsv821657 CNV loss 15273396
nsv824539 CNV gain 20364138
nsv824540 CNV loss 20364138
nsv8288 CNV gain+loss 18304495
nsv831234 CNV loss 17160897
nsv831235 CNV loss 17160897
nsv951106 CNV deletion 24416366
nsv967566 CNV duplication 23825009
nsv971287 CNV duplication 23825009
nsv971628 CNV duplication 23825009
nsv971713 CNV duplication 23825009
nsv972105 CNV duplication 23825009
nsv981913 CNV duplication 23825009

Additional Variant Information for FAM66A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM66A
Leiden Open Variation Database (LOVD)
FAM66A

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM66A Gene

Disorders for FAM66A Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM66A Gene - From: COP

Disorder Aliases PubMed IDs
ovarian carcinosarcoma
  • ovarian malignant mesodermal mixed tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM66A

genes like me logo Genes that share disorders with FAM66A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM66A Gene

Publications for FAM66A Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for FAM66A Gene

Sources for FAM66A Gene