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Aliases for FAM41C Gene

Subcategory (RNA class) for FAM41C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM41C Gene

  • Family With Sequence Similarity 41 Member C 2 3 5
  • Family With Sequence Similarity 41, Member C 2

External Ids for FAM41C Gene

Previous GeneCards Identifiers for FAM41C Gene

  • GC00M9W0000
  • GC01M000844
  • GC01U901284
  • GC01M000803
  • GC01M000072

Summaries for FAM41C Gene

GeneCards Summary for FAM41C Gene

FAM41C (Family With Sequence Similarity 41 Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM41C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM41C Gene

Genomics for FAM41C Gene

GeneHancer (GH) Regulatory Elements for FAM41C Gene

Promoters and enhancers for FAM41C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I000869 Enhancer 1 Ensembl ENCODE 7.7 +6.9 6941 0.7 ATF1 RB1 SIN3A KLF5 ZNF48 RAD21 ZNF335 GLIS2 ZNF207 ZNF143 FAM41C TUBB8P11 LOC101928626
GH01I000858 Enhancer 0.7 Ensembl dbSUPER 8.2 +18.2 18202 1 CTCF REST ZNF600 ZBTB17 FAM41C LINC00115 TUBB8P11 LINC01128 LOC101928626
GH01I000829 Enhancer 0.8 dbSUPER 4.7 +42.5 42459 9.4 HDGF HDAC1 PKNOX1 FOXA2 RARA ZEB1 ZNF366 ZEB2 ZFP69B SMARCA4 LINC00115 LINC01128 LOC101928626 FAM41C TUBB8P11 GC01P000967
GH01I000841 Enhancer 0.5 Ensembl dbSUPER 5.5 +34.9 34902 0.4 PRDM1 FAM41C LOC101928626 LINC01128 TUBB8P11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM41C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM41C gene promoter:

Genomic Locations for FAM41C Gene

Genomic Locations for FAM41C Gene
chr1:868,071-876,903
(GRCh38/hg38)
Size:
8,833 bases
Orientation:
Minus strand
chr1:803,451-812,283
(GRCh37/hg19)

Genomic View for FAM41C Gene

Genes around FAM41C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM41C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM41C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM41C Gene

Proteins for FAM41C Gene

Post-translational modifications for FAM41C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM41C Gene

Domains & Families for FAM41C Gene

Suggested Antigen Peptide Sequences for FAM41C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM41C Gene

Function for FAM41C Gene

Phenotypes for FAM41C Gene

GenomeRNAi human phenotypes for FAM41C:
genes like me logo Genes that share phenotypes with FAM41C: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM41C Gene

Localization for FAM41C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM41C Gene

Pathways & Interactions for FAM41C Gene

SuperPathways for FAM41C Gene

No Data Available

Interacting Proteins for FAM41C Gene

Gene Ontology (GO) - Biological Process for FAM41C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM41C Gene

Drugs & Compounds for FAM41C Gene

No Compound Related Data Available

Transcripts for FAM41C Gene

mRNA/cDNA for FAM41C Gene

(2) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM41C Gene

Family with sequence similarity 41, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM41C Gene

No ASD Table

Relevant External Links for FAM41C Gene

GeneLoc Exon Structure for
FAM41C
ECgene alternative splicing isoforms for
FAM41C

Expression for FAM41C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM41C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM41C Gene:

FAM41C

SOURCE GeneReport for Unigene cluster for FAM41C Gene:

Hs.449006
genes like me logo Genes that share expression patterns with FAM41C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM41C Gene

Orthologs for FAM41C Gene

Evolution for FAM41C Gene

ENSEMBL:
Gene Tree for FAM41C (if available)
TreeFam:
Gene Tree for FAM41C (if available)

No data available for Orthologs for FAM41C Gene

Paralogs for FAM41C Gene

No data available for Paralogs for FAM41C Gene

Variants for FAM41C Gene

Sequence variations from dbSNP and Humsavar for FAM41C Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000193532 -- 870,069(-) C/A intron_variant
rs1000390574 -- 876,414(-) A/C intron_variant
rs1000391144 -- 869,928(-) G/A intron_variant
rs1000527907 -- 868,899(-) A/G intron_variant
rs1000726994 -- 868,537(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM41C Gene

Variant ID Type Subtype PubMed ID
dgv1n111 CNV duplication 26073780
dgv1n67 CNV gain 20364138
dgv2n111 CNV duplication 26073780
dgv3n111 CNV duplication 26073780
dgv4n111 CNV duplication 26073780
dgv5n100 CNV gain 25217958
esv2762129 CNV gain 21179565
esv3325034 CNV duplication 20981092
esv3584976 CNV gain 21293372
esv3584981 CNV loss 21293372
esv3584982 CNV gain 21293372
esv991325 CNV insertion 20482838
nsv1004962 CNV gain 25217958
nsv1005935 CNV gain 25217958
nsv1009537 CNV gain 25217958
nsv10161 CNV gain+loss 18304495
nsv1073556 CNV deletion 25765185
nsv1142735 CNV deletion 24896259
nsv1159750 CNV duplication 26073780
nsv428334 CNV gain 18775914
nsv442837 CNV gain+loss 18776908
nsv482937 CNV loss 15286789
nsv508924 CNV insertion 20534489
nsv517709 CNV gain+loss 19592680
nsv832980 CNV gain 17160897
nsv945739 CNV duplication 23825009

Additional Variant Information for FAM41C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM41C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM41C Gene

Disorders for FAM41C Gene

Additional Disease Information for FAM41C

No disorders were found for FAM41C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM41C Gene

Publications for FAM41C Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 58

Products for FAM41C Gene

Sources for FAM41C Gene

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