Aliases for FAM25BP Gene

Aliases for FAM25BP Gene

  • Family With Sequence Similarity 25 Member B, Pseudogene 2 5
  • Family With Sequence Similarity 25, Member B, Pseudogene 2
  • Family With Sequence Similarity 25, Member B 2
  • Protein FAM25C 3
  • Protein FAM25B 3
  • Protein FAM25 3
  • BA144G6.8 2
  • FAM25BP 5
  • FAM25A 3
  • FAM25B 3
  • FAM25C 3
  • FAM25G 3

External Ids for FAM25BP Gene

Previous HGNC Symbols for FAM25BP Gene

  • FAM25B

Previous GeneCards Identifiers for FAM25BP Gene

  • GC10P046371
  • GC10P046372
  • GC10P046379

Summaries for FAM25BP Gene

GeneCards Summary for FAM25BP Gene

FAM25BP (Family With Sequence Similarity 25 Member B, Pseudogene) is a Pseudogene.

Additional gene information for FAM25BP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM25BP Gene

Genomics for FAM25BP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM25BP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J046368 Promoter/Enhancer 0.7 EPDnew Ensembl 600.7 -0.4 -386 1.4 BCOR NFIB ANXA8L1 ENSG00000279458 FAM25BP lnc-NPY4R-2 ANTXRL
GH10J046367 Enhancer 0.2 Ensembl 600.7 -1.9 -1886 0.4 ENSG00000279458 FAM25BP lnc-NPY4R-2 ANXA8L1 ANTXRL
GH10J046365 Enhancer 0.2 Ensembl 0.7 -2.8 -2786 1 lnc-NPY4R-2 piR-51683 FAM25BP ANXA8L1 ANTXRL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM25BP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM25BP Gene

Genomic Locations for FAM25BP Gene
chr10:46,369,087-46,373,563
(GRCh38/hg38)
Size:
4,477 bases
Orientation:
Plus strand

Genomic View for FAM25BP Gene

Genes around FAM25BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM25BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM25BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM25BP Gene

Proteins for FAM25BP Gene

Post-translational modifications for FAM25BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM25BP Gene

Domains & Families for FAM25BP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM25BP Gene

Function for FAM25BP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM25BP Gene

Localization for FAM25BP Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM25BP gene
Compartment Confidence
cytosol 2
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM25BP Gene

Pathways & Interactions for FAM25BP Gene

PathCards logo

SuperPathways for FAM25BP Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM25BP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM25BP Gene

Drugs & Compounds for FAM25BP Gene

No Compound Related Data Available

Transcripts for FAM25BP Gene

mRNA/cDNA for FAM25BP Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM25BP Gene

No ASD Table

Relevant External Links for FAM25BP Gene

GeneLoc Exon Structure for
FAM25BP

Expression for FAM25BP Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM25BP

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM25BP Gene

Orthologs for FAM25BP Gene

Evolution for FAM25BP Gene

ENSEMBL:
Gene Tree for FAM25BP (if available)
TreeFam:
Gene Tree for FAM25BP (if available)

No data available for Orthologs for FAM25BP Gene

Paralogs for FAM25BP Gene

No data available for Paralogs for FAM25BP Gene

Variants for FAM25BP Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM25BP Gene

Variant ID Type Subtype PubMed ID
dgv1110n54 CNV gain 21841781
dgv1112n54 CNV gain+loss 21841781
dgv1119n54 CNV loss 21841781
dgv135e199 CNV deletion 23128226
dgv28e55 CNV gain 17911159
dgv765n100 CNV loss 25217958
dgv767n100 CNV gain 25217958
dgv807n100 CNV gain 25217958
dgv817n100 CNV loss 25217958
dgv836n100 CNV gain+loss 25217958
dgv837n100 CNV gain 25217958
esv2736152 CNV deletion 23290073
esv3891801 CNV gain+loss 25118596
esv3891802 CNV gain 25118596
nsv1037635 CNV gain 25217958
nsv1041060 CNV gain+loss 25217958
nsv1050225 CNV gain+loss 25217958
nsv1051404 CNV loss 25217958
nsv1161950 CNV duplication 26073780
nsv437116 CNV loss 16327808
nsv550758 CNV loss 21841781
nsv820817 CNV duplication 20802225
nsv831853 CNV gain 17160897
nsv831859 CNV gain+loss 17160897
nsv947949 CNV duplication 23825009
nsv982753 CNV duplication 23825009

Additional Variant Information for FAM25BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM25BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for FAM25BP Gene

Disorders for FAM25BP Gene

Additional Disease Information for FAM25BP

No disorders were found for FAM25BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM25BP Gene

Publications for FAM25BP Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for FAM25BP Gene

Products for FAM25BP Gene

Sources for FAM25BP Gene