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Aliases for FAM239B Gene

Subcategory (RNA class) for FAM239B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM239B Gene

  • Family With Sequence Similarity 239 Member B 2
  • Family With Sequence Similarity 239 Member B (Non-Protein Coding) 2 3
  • Zinc Finger Protein 839 Pseudogene 3

External Ids for FAM239B Gene

Summaries for FAM239B Gene

GeneCards Summary for FAM239B Gene

FAM239B (Family With Sequence Similarity 239 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM239B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM239B Gene

Genomics for FAM239B Gene

GeneHancer (GH) Regulatory Elements for FAM239B Gene

Promoters and enhancers for FAM239B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ003919 Promoter 0.5 Ensembl 0.4 +6.1 6111 3.2 PIR59079 PIR59080 TRI-GAT1-3 FAM239B ENSG00000285756
GH0XJ003910 Enhancer 0.2 Ensembl 0.4 +14.9 14910 2 PIR59079 PIR59080 TRI-GAT1-3 FAM239B FAM239A ENSG00000285756
GH0XJ003907 Enhancer 0.2 Ensembl 0.4 +18.8 18810 0.2 PIR59079 PIR59080 TRI-GAT1-3 FAM239B FAM239A ENSG00000285756
GH0XJ003909 Enhancer 0.2 Ensembl 0.4 +16.3 16310 0.4 PIR59079 PIR59080 TRI-GAT1-3 FAM239B FAM239A ENSG00000285756
GH0XJ003897 Enhancer 0.2 Ensembl 0.3 +28.4 28410 0.2 FAM239A TRI-GAT1-3 PIR59079 PIR59080 FAM239B ENSG00000285756
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM239B on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM239B Gene

Genomic Locations for FAM239B Gene
chrX:3,890,928-3,926,111
(GRCh38/hg38)
Size:
35,184 bases
Orientation:
Minus strand
chrX:3,823,728-3,849,743
(GRCh37/hg19)
Size:
26,016 bases
Orientation:
Minus strand

Genomic View for FAM239B Gene

Genes around FAM239B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM239B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM239B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM239B Gene

Proteins for FAM239B Gene

Post-translational modifications for FAM239B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM239B Gene

Domains & Families for FAM239B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM239B Gene

Function for FAM239B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM239B Gene

Localization for FAM239B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM239B Gene

Pathways & Interactions for FAM239B Gene

PathCards logo

SuperPathways for FAM239B Gene

No Data Available

Interacting Proteins for FAM239B Gene

Gene Ontology (GO) - Biological Process for FAM239B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM239B Gene

Drugs & Compounds for FAM239B Gene

No Compound Related Data Available

Transcripts for FAM239B Gene

mRNA/cDNA for FAM239B Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM239B Gene

No ASD Table

Relevant External Links for FAM239B Gene

GeneLoc Exon Structure for
FAM239B
ECgene alternative splicing isoforms for
FAM239B

Expression for FAM239B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM239B Gene

Orthologs for FAM239B Gene

No data available for Orthologs and Evolution for FAM239B Gene

Paralogs for FAM239B Gene

No data available for Paralogs for FAM239B Gene

Variants for FAM239B Gene

Sequence variations from dbSNP and Humsavar for FAM239B Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1027190063 -- 3,914,931(-) G/C/T intron_variant
rs1044739736 -- 3,905,312(-) G/ intron_variant
rs1050049799 -- 3,886,717(-) G/C genic_downstream_transcript_variant, non_coding_transcript_variant
rs1052311123 -- 3,886,853(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1054510 -- 3,892,934(-) C/T intron_variant, non_coding_transcript_variant

Additional Variant Information for FAM239B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM239B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM239B Gene

Disorders for FAM239B Gene

Additional Disease Information for FAM239B

No disorders were found for FAM239B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM239B Gene

Publications for FAM239B Gene

No publications were found for FAM239B Gene.

No data available for External Links for FAM239B Gene

Products for FAM239B Gene

Sources for FAM239B Gene

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