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Aliases for FAM239B Gene

Subcategory (RNA class) for FAM239B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM239B Gene

  • Family With Sequence Similarity 239 Member B 2
  • Family With Sequence Similarity 239 Member B (Non-Protein Coding) 2 3 5
  • Zinc Finger Protein 839 Pseudogene 3

External Ids for FAM239B Gene

Summaries for FAM239B Gene

GeneCards Summary for FAM239B Gene

FAM239B (Family With Sequence Similarity 239 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM239B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM239B Gene

Genomics for FAM239B Gene

GeneHancer (GH) Regulatory Elements for FAM239B Gene

Promoters and enhancers for FAM239B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ003813 Enhancer 1.6 FANTOM5 Ensembl ENCODE 12.6 +110.3 110255 4.5 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A YY1 POLR2B E2F8 ZNF207 FAM239B PRKX LOC389906 GC0XP003806 GC0XM003869 TRI-GAT1-1
GH0XJ003811 Enhancer 1 Ensembl ENCODE 12.3 +114.0 113971 0.5 PKNOX1 SMAD1 STAT5A BMI1 BATF IRF4 RAD21 ZNF143 ATF7 IKZF2 FAM239B LOC389906 GC0XP003806 TRI-GAT1-1 GC0XM003869
GH0XJ003812 Enhancer 0.8 ENCODE 12.3 +114.3 114316 0.2 CTCF PKNOX1 SMAD1 BACH1 STAT5A EBF1 BMI1 BATF RELA FOXK2 FAM239B GC0XP003806 TRI-GAT1-1 GC0XM003869
GH0XJ003819 Enhancer 0.4 ENCODE 13.1 +105.7 105726 1.1 JUND FOS FAM239B LOC389906 GC0XP003806 TRI-GAT1-1 GC0XM003869
GH0XJ004240 Enhancer 0.6 ENCODE 4.7 -314.7 -314717 1.6 ZBTB21 ELF1 ZBTB40 GABPA POLR2A GABPB1 CREB1 ETV6 SPI1 FAM239B PIR42712 RPL24P9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM239B on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM239B Gene

Genomic Locations for FAM239B Gene
chrX:3,890,928-3,926,111
(GRCh38/hg38)
Size:
35,184 bases
Orientation:
Minus strand
chrX:3,823,728-3,849,743
(GRCh37/hg19)
Size:
26,016 bases
Orientation:
Minus strand

Genomic View for FAM239B Gene

Genes around FAM239B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM239B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM239B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM239B Gene

Function for FAM239B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM239B Gene

Localization for FAM239B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM239B Gene

Pathways & Interactions for FAM239B Gene

SuperPathways for FAM239B Gene

No Data Available

Interacting Proteins for FAM239B Gene

Gene Ontology (GO) - Biological Process for FAM239B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM239B Gene

Drugs & Compounds for FAM239B Gene

No Compound Related Data Available

Transcripts for FAM239B Gene

mRNA/cDNA for FAM239B Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM239B Gene

No ASD Table

Relevant External Links for FAM239B Gene

GeneLoc Exon Structure for
FAM239B
ECgene alternative splicing isoforms for
FAM239B

Expression for FAM239B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM239B Gene

Orthologs for FAM239B Gene

Evolution for FAM239B Gene

ENSEMBL:
Gene Tree for FAM239B (if available)
TreeFam:
Gene Tree for FAM239B (if available)

No data available for Orthologs for FAM239B Gene

Paralogs for FAM239B Gene

No data available for Paralogs for FAM239B Gene

Variants for FAM239B Gene

Additional Variant Information for FAM239B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM239B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM239B Gene

Disorders for FAM239B Gene

Additional Disease Information for FAM239B

No disorders were found for FAM239B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM239B Gene

Publications for FAM239B Gene

No publications were found for FAM239B Gene.

Products for FAM239B Gene

Sources for FAM239B Gene

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