Aliases for FAM238C Gene

Subcategory (RNA class) for FAM238C Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for FAM238C Gene

  • Family With Sequence Similarity 238 Member C 2 3 5
  • Family With Sequence Similarity 238 Member C (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 202-1 2 3
  • Long Intergenic Non-Protein Coding RNA 202 2 3
  • FAM238C 2 170
  • Family With Sequence Similarity 236 Member C (Non-Protein Coding) 3
  • Chromosome 10 Open Reading Frame 51 2
  • Non-Protein Coding RNA 202 2
  • NONHSAG005455 94
  • LINC00202-1 3
  • NCRNA00202 3
  • LINC00202 3
  • BB27G4.1 3
  • C10orf51 3

External Ids for FAM238C Gene

Previous HGNC Symbols for FAM238C Gene

  • C10orf51
  • NCRNA00202
  • LINC00202
  • LINC00202-1

Summaries for FAM238C Gene

GeneCards Summary for FAM238C Gene

FAM238C (Family With Sequence Similarity 238 Member C) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM238C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM238C Gene

Genomics for FAM238C Gene

GeneHancer (GH) Regulatory Elements for FAM238C Gene

Promoters and enhancers for FAM238C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J026946 Enhancer 0.6 Ensembl ENCODE 782.7 -1.7 -1706 1 CTBP1 NRF1 ZNF217 FAM238C MASTL HSALNG0076829
GH10J027152 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.2 -210.0 -210021 5.6 E2F8 SIN3A SP1 ZBTB40 CTCF SIX5 FOXA1 RBPJ POLR2A ATF1 MASTL YME1L1 ANKRD26 SELENOOLP FAM238C LRRC37A6P piR-32214-043
GH10J027099 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.8 -155.6 -155591 2.7 ZBTB40 ZBTB6 RBPJ POLR2A ZNF701 L3MBTL2 MAX ZBTB33 NKRF GTF2F1 ANKRD26 lnc-MASTL-5 MASTL YME1L1 FAM238C piR-53918
GH10J027072 Enhancer 0.4 ENCODE 16.8 -127.9 -127857 0.2 ZBTB33 CTCF ZNF143 BACH1 FAM238C YME1L1 MASTL lnc-YME1L1-1 ANKRD26 piR-45784
GH10J027022 Enhancer 0.4 Ensembl ENCODE 14 -78.6 -78620 2.4 CTCF MASTL FAM238C YME1L1 lnc-YME1L1-2 piR-45784 ANKRD26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM238C on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM238C Gene

Genomic Locations for FAM238C Gene
chr10:26,931,206-26,944,780
(GRCh38/hg38)
Size:
13,575 bases
Orientation:
Minus strand
chr10:27,220,135-27,230,930
(GRCh37/hg19)
Size:
10,796 bases
Orientation:
Minus strand

Genomic View for FAM238C Gene

Genes around FAM238C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM238C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM238C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM238C Gene

Proteins for FAM238C Gene

Post-translational modifications for FAM238C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM238C Gene

Domains & Families for FAM238C Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM238C Gene

Function for FAM238C Gene

Phenotypes From GWAS Catalog for FAM238C Gene

genes like me logo Genes that share phenotypes with FAM238C: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM238C Gene

Localization for FAM238C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM238C Gene

Pathways & Interactions for FAM238C Gene

PathCards logo

SuperPathways for FAM238C Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM238C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM238C Gene

Drugs & Compounds for FAM238C Gene

No Compound Related Data Available

Transcripts for FAM238C Gene

mRNA/cDNA for FAM238C Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(6) NONCODE transcripts :
(6) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM238C Gene

No ASD Table

Relevant External Links for FAM238C Gene

GeneLoc Exon Structure for
FAM238C
ECgene alternative splicing isoforms for
FAM238C

Expression for FAM238C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM238C Gene

Orthologs for FAM238C Gene

Evolution for FAM238C Gene

ENSEMBL:
Gene Tree for FAM238C (if available)
TreeFam:
Gene Tree for FAM238C (if available)

No data available for Orthologs for FAM238C Gene

Paralogs for FAM238C Gene

No data available for Paralogs for FAM238C Gene

Variants for FAM238C Gene

Sequence variations from dbSNP and Humsavar for FAM238C Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000211462 -- 26,942,454(-) G/A upstream_transcript_variant
rs1001000624 -- 26,943,871(-) G/A upstream_transcript_variant
rs1001156423 -- 26,937,184(-) G/A intron_variant
rs1001216276 -- 26,941,439(-) C/T non_coding_transcript_variant
rs1001384525 -- 26,931,720(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM238C Gene

Variant ID Type Subtype PubMed ID
dgv105e214 CNV loss 21293372
dgv383n106 CNV deletion 24896259
dgv695n100 CNV gain 25217958
esv22014 CNV gain+loss 19812545
esv2664616 CNV deletion 23128226
esv2734461 CNV deletion 23290073
esv2734473 CNV deletion 23290073
esv2750887 CNV gain 17911159
esv2750888 CNV gain 17911159
esv2759740 CNV gain+loss 17122850
esv2760143 CNV gain+loss 21179565
esv2760211 CNV gain+loss 21179565
esv2865680 CNV insertion 24192839
esv3305986 CNV mobile element insertion 20981092
esv3364079 CNV insertion 20981092
esv3415799 CNV duplication 20981092
esv3546053 CNV deletion 23714750
esv3576327 CNV gain 25503493
esv3578737 CNV loss 25503493
esv3622706 CNV gain 21293372
nsv1036080 CNV gain 25217958
nsv1116452 OTHER inversion 24896259
nsv1141169 CNV duplication 24896259
nsv1146165 CNV duplication 26484159
nsv1150190 CNV deletion 26484159
nsv1161934 CNV duplication 26073780
nsv1161935 CNV duplication 26073780
nsv442174 CNV gain+loss 18776908
nsv510988 OTHER complex 20534489
nsv512154 CNV loss 21212237
nsv513742 CNV insertion 21212237
nsv550236 CNV gain 21841781
nsv550237 CNV gain 21841781
nsv550238 CNV loss 21841781
nsv550239 CNV gain 21841781
nsv550240 CNV gain 21841781
nsv6154 CNV insertion 18451855
nsv820780 CNV duplication 20802225
nsv831812 CNV gain 17160897
nsv947784 CNV duplication 23825009
nsv956331 CNV deletion 24416366

Additional Variant Information for FAM238C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM238C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM238C Gene

Disorders for FAM238C Gene

Additional Disease Information for FAM238C

No disorders were found for FAM238C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM238C Gene

Publications for FAM238C Gene

  1. Long Noncoding RNA LINC00202 Promotes Tumor Progression by Sponging miR-3619-5p in Retinoblastoma. (PMID: 30905893) Yan G … Chen N (Cell structure and function 2019) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for FAM238C Gene

Sources for FAM238C Gene