Aliases for FAM238A Gene

Subcategory (RNA class) for FAM238A Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for FAM238A Gene

  • Family With Sequence Similarity 238 Member A 2 3 5
  • Family With Sequence Similarity 238 Member A (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 264 2 3
  • Family With Sequence Similarity 236 Member A (Non-Protein Coding) 3
  • Chromosome 10 Open Reading Frame 50 2
  • Non-Protein Coding RNA 264 2
  • Lnc-APBB1IP-1 168
  • NONHSAG005441 92
  • HSALNG0076805 167
  • BA128B16.2 3
  • NCRNA00264 3
  • LINC00264 3
  • C10orf50 3
  • FAM238A 2

External Ids for FAM238A Gene

Previous HGNC Symbols for FAM238A Gene

  • C10orf50
  • NCRNA00264
  • LINC00264

Summaries for FAM238A Gene

GeneCards Summary for FAM238A Gene

FAM238A (Family With Sequence Similarity 238 Member A) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM238A include Renal Cell Carcinoma, Papillary, 1.

Additional gene information for FAM238A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM238A Gene

Genomics for FAM238A Gene

GeneHancer (GH) Regulatory Elements for FAM238A Gene

Promoters and enhancers for FAM238A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J026589 Enhancer 0.2 Ensembl 500.7 -0.7 -664 0.4 FAM238A LOC101929117 ENSG00000236894
GH10J026584 Enhancer 0.3 Ensembl 0.7 -4.8 -4764 0.6 CEBPB FAM238A LOC101929117 ENSG00000236894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM238A on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM238A Gene

Genomic Locations for FAM238A Gene
chr10:26,589,865-26,594,330
(GRCh38/hg38)
Size:
4,466 bases
Orientation:
Plus strand
chr10:26,878,794-26,883,253
(GRCh37/hg19)
Size:
4,460 bases
Orientation:
Plus strand

Genomic View for FAM238A Gene

Genes around FAM238A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM238A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM238A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM238A Gene

Proteins for FAM238A Gene

Post-translational modifications for FAM238A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM238A Gene

Domains & Families for FAM238A Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM238A Gene

Function for FAM238A Gene

Phenotypes for FAM238A Gene

genes like me logo Genes that share phenotypes with FAM238A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM238A Gene

Localization for FAM238A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM238A Gene

Pathways & Interactions for FAM238A Gene

PathCards logo

SuperPathways for FAM238A Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for FAM238A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM238A Gene

Drugs & Compounds for FAM238A Gene

No Compound Related Data Available

Transcripts for FAM238A Gene

mRNA/cDNA for FAM238A Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
1 LncBook transcripts :
7 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM238A Gene

No ASD Table

Relevant External Links for FAM238A Gene

GeneLoc Exon Structure for
FAM238A

Expression for FAM238A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM238A

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM238A Gene

Orthologs for FAM238A Gene

Evolution for FAM238A Gene

ENSEMBL:
Gene Tree for FAM238A (if available)
TreeFam:
Gene Tree for FAM238A (if available)

No data available for Orthologs for FAM238A Gene

Paralogs for FAM238A Gene

No data available for Paralogs for FAM238A Gene

Variants for FAM238A Gene

Additional dbSNP identifiers (rs#s) for FAM238A Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM238A Gene

Variant ID Type Subtype PubMed ID
dgv198e212 CNV loss 25503493
esv2734384 CNV deletion 23290073
esv3221 CNV loss 18987735
esv3891778 CNV gain 25118596
nsv1049695 CNV loss 25217958
nsv436046 CNV insertion 17901297
nsv550229 CNV loss 21841781
nsv550231 CNV loss 21841781
nsv947776 CNV duplication 23825009

Additional Variant Information for FAM238A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM238A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM238A Gene

Disorders for FAM238A Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM238A Gene - From: DISEASES

Disorder Aliases PubMed IDs
renal cell carcinoma, papillary, 1
  • rccp1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM238A

genes like me logo Genes that share disorders with FAM238A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM238A Gene

Publications for FAM238A Gene

No publications were found for FAM238A Gene.

Products for FAM238A Gene

Sources for FAM238A Gene