Aliases for FAM230H Gene

Subcategory (RNA class) for FAM230H Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM230H Gene

  • Family With Sequence Similarity 230 Member H 2 3 5
  • FAM230H 2 5
  • NONHSAG033362.2 91
  • NONHSAG033241.2 91
  • HSALNG0134220 164
  • HSALNG0134219 164
  • HSALNG0133967 164
  • Lnc-GGT2-26 165
  • AP000552.1 2

External Ids for FAM230H Gene

Previous GeneCards Identifiers for FAM230H Gene

  • GC22M021303

Summaries for FAM230H Gene

GeneCards Summary for FAM230H Gene

FAM230H (Family With Sequence Similarity 230 Member H) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM230H include Heart Disease. An important paralog of this gene is LOC100996415.

Additional gene information for FAM230H Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM230H Gene

Genomics for FAM230H Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM230H Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J021325 Promoter 0.3 Ensembl 600.7 +0.9 935 0.6 FAM230H ENSG00000237407 ENSG00000286102 GGT2
GH22J021316 Enhancer 0.2 Ensembl 0.4 +9.3 9335 1 ENSG00000237407 FAM230H GGT2 ENSG00000286102
GH22J021306 Enhancer 0.2 Ensembl 0.4 +20.5 20535 0.2 ENSG00000237407 BCRP6 FAM230H GGT2 ENSG00000286102
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM230H on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM230H Gene

Genomic Locations for FAM230H Gene
chr22:21,300,990-21,326,636
(GRCh38/hg38)
Size:
25,647 bases
Orientation:
Minus strand

Genomic View for FAM230H Gene

Genes around FAM230H on UCSC Golden Path with GeneCards custom track
FAM230H in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM230H Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM230H Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM230H Gene

Proteins for FAM230H Gene

Post-translational modifications for FAM230H Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM230H Gene

Domains & Families for FAM230H Gene

genes like me logo Genes that share domains with FAM230H: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM230H Gene

Function for FAM230H Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM230H Gene

Localization for FAM230H Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM230H Gene

Pathways & Interactions for FAM230H Gene

PathCards logo

SuperPathways for FAM230H Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM230H Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM230H Gene

Drugs & Compounds for FAM230H Gene

No Compound Related Data Available

Transcripts for FAM230H Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM230H Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001BC908_9606 lncRNA 3714 4

Ensembl: ENST00000436681 (view in UCSC) ,

LncBook: HSALNT0289483,

LNCipedia: lnc-GGT2-26:12,

NONCODE: NONHSAT083652.2,

URS0000535995_9606 lncRNA 1857 4

Ensembl: ENST00000416405 (view in UCSC) ,

LncBook: HSALNT0275582,

LNCipedia: lnc-GGT2-26:11,

NONCODE: NONHSAT083656.2,

URS000007866C_9606 lncRNA 673 4

Ensembl: ENST00000431488 (view in UCSC) ,

LncBook: HSALNT0275583,

LNCipedia: lnc-GGT2-26:3,

NONCODE: NONHSAT083657.2,

URS0000000787_9606 lncRNA 576 4

Ensembl: ENST00000452952 (view in UCSC) ,

LncBook: HSALNT0275589,

LNCipedia: lnc-GGT2-26:6,

NONCODE: NONHSAT083661.2,

URS0000537432_9606 lncRNA 570 4

Ensembl: ENST00000453273 (view in UCSC) ,

LncBook: HSALNT0275584,

LNCipedia: lnc-GGT2-26:7,

NONCODE: NONHSAT083658.2,

FAM230H in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM230H Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM230H Gene

No ASD Table

Relevant External Links for FAM230H Gene

GeneLoc Exon Structure for
FAM230H

Expression for FAM230H Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM230H Gene

Orthologs for FAM230H Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM230H Gene

Organism Taxonomy Gene Similarity Type Details
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia LOC101732313 30
Species where no ortholog for FAM230H was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for FAM230H Gene

ENSEMBL:
Gene Tree for FAM230H (if available)
TreeFam:
Gene Tree for FAM230H (if available)

Paralogs for FAM230H Gene

Paralogs for FAM230H Gene

genes like me logo Genes that share paralogs with FAM230H: view

Variants for FAM230H Gene

Additional dbSNP identifiers (rs#s) for FAM230H Gene

Additional Variant Information for FAM230H Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM230H

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM230H Gene

Disorders for FAM230H Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM230H Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
heart disease
  • congenital heart disease
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM230H

genes like me logo Genes that share disorders with FAM230H: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM230H Gene

Publications for FAM230H Gene

  1. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. (PMID: 29668722) Delihas N (PloS one 2018) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAM230H Gene

Sources for FAM230H Gene