Aliases for FAM230F Gene

Subcategory (RNA class) for FAM230F Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM230F Gene

  • Family With Sequence Similarity 230 Member F 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1663 2 3
  • LINC01663 3 165
  • FAM230F 2 5
  • NONHSAG033241.2 91
  • HSALNG0133967 164

External Ids for FAM230F Gene

Previous HGNC Symbols for FAM230F Gene

  • LINC01663

Previous GeneCards Identifiers for FAM230F Gene

  • GC22M018874

Summaries for FAM230F Gene

GeneCards Summary for FAM230F Gene

FAM230F (Family With Sequence Similarity 230 Member F) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM230F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM230F Gene

Genomics for FAM230F Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM230F Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J018894 Promoter 0.3 Ensembl 600.7 +1.0 992 2.2 FAM230F lnc-DGCR6-3 DGCR6 LOC101929738
GH22J018880 Enhancer 0.4 Ensembl 0.4 +13.3 13291 1.2 PRDM10 NFIC NFIB ENSG00000279987 FAM230F DGCR6 lnc-PRODH-3 LOC101929738
GH22J018892 Enhancer 0.2 ENCODE 0.7 +2.2 2219 0.2 FAM230F lnc-DGCR6-3 DGCR6 LOC101929738
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM230F on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM230F Gene

Genomic Locations for FAM230F Gene
chr22:18,865,042-18,894,692
(GRCh38/hg38)
Size:
29,651 bases
Orientation:
Minus strand

Genomic View for FAM230F Gene

Genes around FAM230F on UCSC Golden Path with GeneCards custom track
FAM230F in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM230F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM230F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM230F Gene

Proteins for FAM230F Gene

Post-translational modifications for FAM230F Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM230F Gene

Domains & Families for FAM230F Gene

genes like me logo Genes that share domains with FAM230F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM230F Gene

Function for FAM230F Gene

Phenotypes From GWAS Catalog for FAM230F Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM230F Gene

Localization for FAM230F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM230F Gene

Pathways & Interactions for FAM230F Gene

PathCards logo

SuperPathways for FAM230F Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM230F Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM230F Gene

Drugs & Compounds for FAM230F Gene

No Compound Related Data Available

Transcripts for FAM230F Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM230F Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DD39B_9606 lncRNA 535 3

Ensembl: ENST00000614596 (view in UCSC) ,

LNCipedia: LINC01663:9,

NONCODE: NONHSAT192623.1,

URS0000A76FBE_9606 lncRNA 3190 2

HGNC: 52451,

LNCipedia: LINC01663:4,

URS0001980E1F_9606 lncRNA 3191 1

RefSeq: NR_136571,

URS00008B220C_9606 lncRNA 775 3

LncBook: HSALNT0275190,

LNCipedia: LINC01663:8,

NONCODE: NONHSAT083298.2,

URS00008BCA8F_9606 lncRNA 773 3

LncBook: HSALNT0275191,

LNCipedia: LINC01663:7,

NONCODE: NONHSAT083299.2,

FAM230F in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM230F Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM230F Gene

No ASD Table

Relevant External Links for FAM230F Gene

GeneLoc Exon Structure for
FAM230F

Expression for FAM230F Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM230F Gene

Orthologs for FAM230F Gene

Evolution for FAM230F Gene

ENSEMBL:
Gene Tree for FAM230F (if available)
TreeFam:
Gene Tree for FAM230F (if available)

No data available for Orthologs for FAM230F Gene

Paralogs for FAM230F Gene

No data available for Paralogs for FAM230F Gene

Variants for FAM230F Gene

Additional dbSNP identifiers (rs#s) for FAM230F Gene

Additional Variant Information for FAM230F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM230F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM230F Gene

Disorders for FAM230F Gene

Additional Disease Information for FAM230F

No disorders were found for FAM230F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM230F Gene

Publications for FAM230F Gene

  1. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. (PMID: 29668722) Delihas N (PloS one 2018) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for FAM230F Gene

Sources for FAM230F Gene