Aliases for FAM230D Gene

Subcategory (RNA class) for FAM230D Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for FAM230D Gene

  • Family With Sequence Similarity 230 Member D 2 3 5
  • Long Intergenic Non-Protein Coding RNA 2592 2 3
  • LINC02592 3 165
  • FAM230D 2 5
  • NONHSAG033231.2 91
  • AC008079.1 2

External Ids for FAM230D Gene

Previous HGNC Symbols for FAM230D Gene

  • LINC02592

Summaries for FAM230D Gene

GeneCards Summary for FAM230D Gene

FAM230D (Family With Sequence Similarity 230 Member D) is an RNA Gene, and is affiliated with the lncRNA class. An important paralog of this gene is LOC101927859.

Additional gene information for FAM230D Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM230D Gene

Genomics for FAM230D Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM230D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J018206 Promoter 0.7 EPDnew Ensembl 600.7 +0.3 314 0.8 FAM230D piR-39858-422 USP18 FAM247B
GH22J018193 Enhancer 0.2 Ensembl 0.4 +11.7 11714 1.2 piR-39858-422 FAM230D USP18 FAM247B
GH22J018182 Enhancer 0.2 Ensembl 0.4 +23.1 23114 0.4 piR-39858-422 piR-49204-005 FAM230D USP18 FAM247B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM230D on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM230D Gene

Genomic Locations for FAM230D Gene
chr22:18,178,026-18,205,915
(GRCh38/hg38)
Size:
27,890 bases
Orientation:
Minus strand
chr22:20,326,328-20,350,457
(GRCh37/hg19)
Size:
24,130 bases
Orientation:
Plus strand

Genomic View for FAM230D Gene

Genes around FAM230D on UCSC Golden Path with GeneCards custom track
FAM230D in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM230D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM230D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM230D Gene

Proteins for FAM230D Gene

Post-translational modifications for FAM230D Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM230D Gene

Domains & Families for FAM230D Gene

genes like me logo Genes that share domains with FAM230D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM230D Gene

Function for FAM230D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM230D Gene

Localization for FAM230D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM230D Gene

Pathways & Interactions for FAM230D Gene

PathCards logo

SuperPathways for FAM230D Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM230D Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM230D Gene

Drugs & Compounds for FAM230D Gene

No Compound Related Data Available

Transcripts for FAM230D Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM230D Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003073EF_9606 lncRNA 1859 3

Ensembl: ENST00000434390 (view in UCSC) ,

LNCipedia: LINC02592:7,

NONCODE: NONHSAT083264.2,

URS0000A7681F_9606 lncRNA 2938 2

HGNC: 53910,

LNCipedia: LINC02592:3,

URS0001980E2B_9606 lncRNA 2984 1

RefSeq: NR_136570,

URS00008B97A8_9606 lncRNA 1859 2

LNCipedia: LINC02592:9,

NONCODE: NONHSAT083262.2,

URS00008BDC75_9606 lncRNA 1859 2

LNCipedia: LINC02592:8,

NONCODE: NONHSAT083263.2,

FAM230D in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM230D Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM230D Gene

No ASD Table

Relevant External Links for FAM230D Gene

GeneLoc Exon Structure for
FAM230D

Expression for FAM230D Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM230D Gene

Orthologs for FAM230D Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM230D Gene

Organism Taxonomy Gene Similarity Type Details
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia LOC101732313 30
Species where no ortholog for FAM230D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for FAM230D Gene

ENSEMBL:
Gene Tree for FAM230D (if available)
TreeFam:
Gene Tree for FAM230D (if available)

Paralogs for FAM230D Gene

Paralogs for FAM230D Gene

genes like me logo Genes that share paralogs with FAM230D: view

Variants for FAM230D Gene

Additional dbSNP identifiers (rs#s) for FAM230D Gene

Additional Variant Information for FAM230D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM230D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM230D Gene

Disorders for FAM230D Gene

No disorders were found for FAM230D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM230D Gene

Publications for FAM230D Gene

  1. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. (PMID: 29668722) Delihas N (PloS one 2018) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for FAM230D Gene

Sources for FAM230D Gene