Aliases for FAM225A Gene

Subcategory (RNA class) for FAM225A Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for FAM225A Gene

  • Family With Sequence Similarity 225 Member A 2 3 5
  • FAM225A 2 5 165
  • Family With Sequence Similarity 225 Member A (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 256A 2 3
  • Non-Protein Coding RNA 256A 2 3
  • Family With Sequence Similarity 225, Member A (Non-Protein Coding) 2
  • Chromosome 9 Open Reading Frame 109 2
  • NONHSAG053229.2 91
  • DKFZp686A0127 2
  • NCRNA00256A 3
  • LINC00256A 3
  • C9orf109 3
  • FAM225B 2

External Ids for FAM225A Gene

Previous HGNC Symbols for FAM225A Gene

  • C9orf109
  • NCRNA00256A
  • LINC00256A

Previous GeneCards Identifiers for FAM225A Gene

  • GC09P116083
  • GC09P116351
  • GC09P116479
  • GC09P116828

Summaries for FAM225A Gene

GeneCards Summary for FAM225A Gene

FAM225A (Family With Sequence Similarity 225 Member A) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM225A include Retinitis Pigmentosa 11 and Sotos Syndrome 1.

Additional gene information for FAM225A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM225A Gene

Genomics for FAM225A Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around FAM225A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM225A Gene

Genomic Locations for FAM225A Gene
chr9:113,112,896-113,119,928
(GRCh38/hg38)
Size:
7,033 bases
Orientation:
Plus strand
chr9:115,875,176-115,882,208
(GRCh37/hg19)
Size:
7,033 bases
Orientation:
Plus strand

Genomic View for FAM225A Gene

Genes around FAM225A on UCSC Golden Path with GeneCards custom track
FAM225A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM225A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM225A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM225A Gene

Proteins for FAM225A Gene

Post-translational modifications for FAM225A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM225A Gene

Domains & Families for FAM225A Gene

Gene Families for FAM225A Gene

genes like me logo Genes that share domains with FAM225A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM225A Gene

Function for FAM225A Gene

Phenotypes From GWAS Catalog for FAM225A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM225A Gene

Localization for FAM225A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM225A gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM225A Gene

Pathways & Interactions for FAM225A Gene

PathCards logo

SuperPathways for FAM225A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM225A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM225A Gene

Drugs & Compounds for FAM225A Gene

No Compound Related Data Available

Transcripts for FAM225A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM225A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BD7B_9606 lncRNA 5802 4

HGNC: 27855,

RefSeq: NR_024366,

LNCipedia: FAM225A:2,

NONCODE: NONHSAT134170.2,

URS000030FFEF_9606 lncRNA 6100 3

Ensembl: ENST00000434051 (view in UCSC) ,

LNCipedia: FAM225A:3,

NONCODE: NONHSAT134171.2,

URS000075B874_9606 lncRNA 5725 2

HGNC: 21865,

RefSeq: NR_024376,

URS0000EEBDD4_9606 lncRNA 5656 1

Ensembl: ENST00000453010 (view in UCSC) ,

URS00008C09B6_9606 lncRNA 5800 1

LNCipedia: FAM225A:1,

FAM225A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM225A Gene

57 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM225A Gene

No ASD Table

Relevant External Links for FAM225A Gene

GeneLoc Exon Structure for
FAM225A

Expression for FAM225A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM225A Gene

mRNA differential expression in normal tissues according to GTEx for FAM225A Gene

This gene is overexpressed in Testis (x27.8) and Brain - Spinal cord (cervical c-1) (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM225A

genes like me logo Genes that share expression patterns with FAM225A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM225A Gene

Orthologs for FAM225A Gene

Evolution for FAM225A Gene

ENSEMBL:
Gene Tree for FAM225A (if available)
TreeFam:
Gene Tree for FAM225A (if available)

No data available for Orthologs for FAM225A Gene

Paralogs for FAM225A Gene

No data available for Paralogs for FAM225A Gene

Variants for FAM225A Gene

Additional dbSNP identifiers (rs#s) for FAM225A Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM225A Gene

Variant ID Type Subtype PubMed ID
dgv1232n67 CNV gain 20364138
dgv1502e214 CNV gain 21293372
dgv2180e212 CNV gain 25503493
dgv279n111 CNV duplication 26073780
dgv7704n100 CNV loss 25217958
dgv7705n100 CNV gain 25217958
esv1001772 OTHER inversion 20482838
esv2759710 CNV gain 17122850
esv2761253 CNV loss 21179565
esv3621529 CNV loss 21293372
esv3621530 CNV gain 21293372
esv3621531 CNV loss 21293372
esv3891715 CNV gain 25118596
esv3891716 CNV loss 25118596
nsv1051654 CNV gain 25217958
nsv442164 CNV gain+loss 18776908
nsv831691 CNV loss 17160897
nsv972442 CNV duplication 23825009

Additional Variant Information for FAM225A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM225A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM225A Gene

Disorders for FAM225A Gene

MalaCards: The human disease database

(3) MalaCards diseases for FAM225A Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
sotos syndrome 1
  • sotos1
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with FAM225A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM225A Gene

Publications for FAM225A Gene

  1. Long Noncoding RNA FAM225A Promotes Nasopharyngeal Carcinoma Tumorigenesis and Metastasis by Acting as ceRNA to Sponge miR-590-3p/miR-1275 and Upregulate ITGB3. (PMID: 31331909) Zheng ZQ … Sun Y (Cancer research 2019) 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAM225A Gene

Sources for FAM225A Gene