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Aliases for FAM222A-AS1 Gene

Subcategory (RNA class) for FAM222A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM222A-AS1 Gene

  • FAM222A Antisense RNA 1 2 3 5
  • FAM222A Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for FAM222A-AS1 Gene

Previous GeneCards Identifiers for FAM222A-AS1 Gene

  • GC12M110172

Summaries for FAM222A-AS1 Gene

GeneCards Summary for FAM222A-AS1 Gene

FAM222A-AS1 (FAM222A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM222A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A-AS1 Gene

Genomics for FAM222A-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM222A-AS1 Gene

Promoters and enhancers for FAM222A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J109773 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +0.2 207 1 SP1 CTCF REST MNT MAX MXI1 ZBTB17 ZFP91 RXRA POLR2A FAM222A-AS1 GC12P109715
GH12J109775 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 -2.0 -1992 0.6 CC2D1A CTCF ZBTB7A RAD21 ZNF143 REST LARP7 TRIM22 RCOR1 MYNN FAM222A-AS1 TRPV4 ENSG00000255655 RNU4-32P MMAB MVK MIR4497
GH12J109736 Enhancer 1.3 Ensembl ENCODE dbSUPER 17.6 +33.4 33388 6.5 ZNF652 ELF3 CBFA2T2 CEBPG CSDE1 NFIB AHR TRIM24 SP1 HNF1A FAM222A-AS1 FAM222A TRPV4 GC12P109715
GH12J109734 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 16.6 +38.9 38858 0.9 SP1 ZNF121 REST RCOR1 SIN3A FAM222A-AS1 FAM222A TRPV4 GC12P109715
GH12J109751 Enhancer 1 Ensembl ENCODE dbSUPER 17.4 +21.0 21016 1.9 SP5 ZNF644 POLR2A NR2F2 RCOR1 ARID4B KDM1A THRB ETV5 FAM222A-AS1 FAM222A MMAB MVK RNU4-32P ENSG00000249094 GLTP GC12P109715
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM222A-AS1 Gene

Genomic Locations for FAM222A-AS1 Gene
chr12:109,734,166-109,773,508
(GRCh38/hg38)
Size:
39,343 bases
Orientation:
Minus strand
chr12:110,171,130-110,211,313
(GRCh37/hg19)
Size:
40,184 bases
Orientation:
Minus strand

Genomic View for FAM222A-AS1 Gene

Genes around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM222A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM222A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A-AS1 Gene

Proteins for FAM222A-AS1 Gene

Post-translational modifications for FAM222A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM222A-AS1 Gene

Domains & Families for FAM222A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM222A-AS1 Gene

Function for FAM222A-AS1 Gene

Phenotypes From GWAS Catalog for FAM222A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM222A-AS1 Gene

Localization for FAM222A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM222A-AS1 Gene

Pathways & Interactions for FAM222A-AS1 Gene

PathCards logo

SuperPathways for FAM222A-AS1 Gene

No Data Available

Interacting Proteins for FAM222A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM222A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM222A-AS1 Gene

Drugs & Compounds for FAM222A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM222A-AS1 Gene

mRNA/cDNA for FAM222A-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Unigene Clusters for FAM222A-AS1 Gene

FAM222A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A-AS1 Gene

No ASD Table

Relevant External Links for FAM222A-AS1 Gene

GeneLoc Exon Structure for
FAM222A-AS1
ECgene alternative splicing isoforms for
FAM222A-AS1

Expression for FAM222A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM222A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A-AS1 Gene

This gene is overexpressed in Testis (x20.4) and Adrenal Gland (x4.7).

SOURCE GeneReport for Unigene cluster for FAM222A-AS1 Gene:

Hs.675961
genes like me logo Genes that share expression patterns with FAM222A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM222A-AS1 Gene

Orthologs for FAM222A-AS1 Gene

Evolution for FAM222A-AS1 Gene

ENSEMBL:
Gene Tree for FAM222A-AS1 (if available)
TreeFam:
Gene Tree for FAM222A-AS1 (if available)

No data available for Orthologs for FAM222A-AS1 Gene

Paralogs for FAM222A-AS1 Gene

No data available for Paralogs for FAM222A-AS1 Gene

Variants for FAM222A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM222A-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs763757845 likely-pathogenic, Abnormality of brain morphology 109,768,213(-) A/T intron_variant
rs1000064963 -- 109,773,837(-) C/T upstream_transcript_variant
rs1000085498 -- 109,774,393(-) A/G upstream_transcript_variant
rs1000143821 -- 109,734,730(-) G/A/C intron_variant
rs1000178989 -- 109,740,251(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM222A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3630725 CNV loss 21293372
nsv478915 CNV novel sequence insertion 20440878

Additional Variant Information for FAM222A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM222A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM222A-AS1 Gene

Disorders for FAM222A-AS1 Gene

Additional Disease Information for FAM222A-AS1

No disorders were found for FAM222A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM222A-AS1 Gene

Publications for FAM222A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for FAM222A-AS1 Gene

Sources for FAM222A-AS1 Gene

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