Aliases for FAM21EP Gene

Aliases for FAM21EP Gene

  • Family With Sequence Similarity 21 Member E, Pseudogene 2 5
  • Family With Sequence Similarity 21, Member E, Pseudogene 2
  • Family With Sequence Similarity 21, Member A Pseudogene 3
  • FAM21B Pseudogene 3
  • FLJ31813 2
  • FAM21EP 5

External Ids for FAM21EP Gene

Previous GeneCards Identifiers for FAM21EP Gene

  • GC10M051808

Summaries for FAM21EP Gene

GeneCards Summary for FAM21EP Gene

FAM21EP (Family With Sequence Similarity 21 Member E, Pseudogene) is a Pseudogene.

Additional gene information for FAM21EP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM21EP Gene

Genomics for FAM21EP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM21EP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J050067 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.6 -598 3.2 ZNF221 SP1 CREB1 ZNF629 TFE3 LEF1 POLR2A ZNF692 BACH1 FOS WASHC2A FAM21EP lnc-PARG-1 TIMM23B-AGAP6 ERCC6 AGAP6 PARG RNA5SP317 SGMS1-AS1 SGMS1
GH10J050034 Enhancer 0.5 Ensembl 7.7 +32.5 32502 1.8 SOX13 RFX3 RFX1 FOXA2 FOXA1 SOX5 FOXA3 WASHC2A FAM21EP SLC9A3P3 lnc-WASHC2A-1 lnc-PARG-1 AGAP6
GH10J050017 Enhancer 0.3 Ensembl 4.5 +50.1 50099 0.6 ZNF316 AGAP6 WASHC2A FAM21EP HSALNG0077937 SLC9A3P3
GH10J050055 Enhancer 0.2 Ensembl 0.4 +11.9 11902 0.2 piR-31973-003 WASHC2A piR-31939 FAM21EP lnc-PARG-1 AGAP6
GH10J050048 Enhancer 0.2 Ensembl 0.4 +19.4 19402 0.8 piR-31939 WASHC2A piR-31973-003 FAM21EP lnc-PARG-1 AGAP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM21EP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM21EP Gene

Genomic Locations for FAM21EP Gene
chr10:50,021,182-50,067,803
(GRCh38/hg38)
Size:
46,622 bases
Orientation:
Minus strand
chr10:51,816,538-51,819,040
(GRCh37/hg19)
Size:
2,503 bases
Orientation:
Minus strand

Genomic View for FAM21EP Gene

Genes around FAM21EP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM21EP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM21EP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM21EP Gene

Proteins for FAM21EP Gene

Post-translational modifications for FAM21EP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM21EP Gene

Domains & Families for FAM21EP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM21EP Gene

Function for FAM21EP Gene

Phenotypes From GWAS Catalog for FAM21EP Gene

Phenotypes for FAM21EP Gene

genes like me logo Genes that share phenotypes with FAM21EP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM21EP Gene

Localization for FAM21EP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM21EP Gene

Pathways & Interactions for FAM21EP Gene

PathCards logo

SuperPathways for FAM21EP Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM21EP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM21EP Gene

Drugs & Compounds for FAM21EP Gene

No Compound Related Data Available

Transcripts for FAM21EP Gene

mRNA/cDNA for FAM21EP Gene

1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM21EP Gene

No ASD Table

Relevant External Links for FAM21EP Gene

GeneLoc Exon Structure for
FAM21EP

Expression for FAM21EP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM21EP Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM21EP

genes like me logo Genes that share expression patterns with FAM21EP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM21EP Gene

Orthologs for FAM21EP Gene

Evolution for FAM21EP Gene

ENSEMBL:
Gene Tree for FAM21EP (if available)
TreeFam:
Gene Tree for FAM21EP (if available)

No data available for Orthologs for FAM21EP Gene

Paralogs for FAM21EP Gene

No data available for Paralogs for FAM21EP Gene

Variants for FAM21EP Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM21EP Gene

Variant ID Type Subtype PubMed ID
dgv233e212 CNV loss 25503493
dgv853n100 CNV gain 25217958
esv21939 CNV gain 19812545
esv2660883 CNV deletion 23128226
esv3623192 CNV loss 21293372
esv3623193 CNV loss 21293372
nsv1039808 CNV gain 25217958
nsv1051087 CNV loss 25217958
nsv1052504 CNV loss 25217958
nsv523210 CNV loss 19592680
nsv831868 CNV loss 17160897
nsv947999 CNV duplication 23825009
nsv975704 CNV duplication 23825009

Additional Variant Information for FAM21EP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM21EP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for FAM21EP Gene

Disorders for FAM21EP Gene

Additional Disease Information for FAM21EP

No disorders were found for FAM21EP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM21EP Gene

Publications for FAM21EP Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for FAM21EP Gene

Sources for FAM21EP Gene