Aliases for FAM215B Gene

Data sources for FAM215B Gene:

RNA type for FAM215B Gene

lncRNA

Aliases for FAM215B Gene

External Ids for FAM215B Gene

Previous GeneCards Identifiers for FAM215B Gene

  • GC17M044639
  • GC17M044640
  • GC17M044642
  • GC17M046558
  • GC17M046630

Summaries for FAM215B Gene

GeneCards Summary for FAM215B Gene

FAM215B (Family With Sequence Similarity 215 Member B) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM215B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM215B Gene

Genomics for FAM215B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM215B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J046560 Promoter 0.3 Ensembl 0.7 +3.5 3494 0.2 piR-41511-002 piR-33771-002 FAM215B ARL17A HSALNG0116933-002 LRRC37A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM215B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM215B Gene

Latest Assembly
chr17:46,557,253-46,562,795
(GRCh38/hg38)
Size:
5,543 bases
Orientation:
Minus strand

Previous Assembly
chr17:44,636,196-44,640,161
(GRCh37/hg19 by Ensembl)
Size:
3,966 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr17(ALT_REF_LOCI_2):1,079,228-1,081,402 (-)

Genomic View for FAM215B Gene

Genes around FAM215B on UCSC Golden Path with GeneCards custom track
FAM215B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM215B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM215B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM215B Gene

Proteins for FAM215B Gene

Post-translational modifications for FAM215B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM215B Gene

Domains & Families for FAM215B Gene

Gene Families for FAM215B Gene

genes like me logo Genes that share domains with FAM215B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM215B Gene

Function for FAM215B Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM215B Gene

Localization for FAM215B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM215B Gene

Pathways & Interactions for FAM215B Gene

PathCards logo

SuperPathways for FAM215B Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM215B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM215B Gene

Drugs & Compounds for FAM215B Gene

No Compound Related Data Available

Transcripts for FAM215B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM215B Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000234DB3_9606 lncRNA 2183 3

Ensembl: ENST00000458392 (view in UCSC) ,

LNCipedia: FAM215B:1,

NONCODE: NONHSAT054213.2,

URS0001BE41EC_9606 lncRNA 529 1

LncBook: HSALNT0241611,

FAM215B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM215B Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM215B Gene

No ASD Table

Relevant External Links for FAM215B Gene

GeneLoc Exon Structure for
FAM215B

Expression for FAM215B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM215B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM215B

genes like me logo Genes that share expression patterns with FAM215B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM215B Gene

Orthologs for FAM215B Gene

Evolution for FAM215B Gene

ENSEMBL:
Gene Tree for FAM215B (if available)
TreeFam:
Gene Tree for FAM215B (if available)
Alliance of Genome Resources:
Additional Orthologs for FAM215B

No data available for Orthologs for FAM215B Gene

Paralogs for FAM215B Gene

No data available for Paralogs for FAM215B Gene

Variants for FAM215B Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM215B Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for FAM215B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM215B
Leiden Open Variation Database (LOVD)
FAM215B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM215B Gene

Disorders for FAM215B Gene

Additional Disease Information for FAM215B

No disorders were found for FAM215B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM215B Gene

Publications for FAM215B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for FAM215B Gene

Products for FAM215B Gene

Sources for FAM215B Gene