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Aliases for FAM201A Gene

Subcategory (RNA class) for FAM201A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM201A Gene

  • Family With Sequence Similarity 201 Member A 2 3 5
  • C9orf122 3 4
  • Family With Sequence Similarity 201, Member A 2
  • Chromosome 9 Open Reading Frame 122 2

External Ids for FAM201A Gene

Previous HGNC Symbols for FAM201A Gene

  • C9orf122

Summaries for FAM201A Gene

GeneCards Summary for FAM201A Gene

FAM201A (Family With Sequence Similarity 201 Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM201A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM201A Gene

Genomics for FAM201A Gene

GeneHancer (GH) Regulatory Elements for FAM201A Gene

Promoters and enhancers for FAM201A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I038619 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 558.5 +0.1 141 2 HDGF ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF143 REST KAT8 ANKRD18A FAM201A TRMT10B EXOSC3
GH09I038621 Enhancer 0.6 ENCODE 550.8 +1.5 1485 0.1 ZNF777 SIN3A REST ZBTB8A ZNF501 ZIC2 ZNF335 ZNF692 POLR2A ZBTB26 ANKRD18A FAM201A GC09M038752
GH09I038622 Enhancer 0.6 ENCODE 550.8 +1.6 1565 0 ZNF777 SIN3A REST ZBTB8A ZNF501 ZIC2 ZNF335 POLR2A ZBTB26 ZBTB17 ANKRD18A FAM201A GC09M038752
GH09I038685 Enhancer 0.4 ENCODE 5.2 +65.3 65268 1 POU5F1 BATF CNTNAP3 FAM201A RNU6-765P FAM240B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM201A on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM201A Gene

Genomic Locations for FAM201A Gene
chr9:38,620,474-38,624,990
(GRCh38/hg38)
Size:
4,517 bases
Orientation:
Plus strand
chr9:38,620,471-38,624,987
(GRCh37/hg19)

Genomic View for FAM201A Gene

Genes around FAM201A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM201A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM201A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM201A Gene

Proteins for FAM201A Gene

  • Protein details for FAM201A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY85-F201A_HUMAN
    Recommended name:
    Protein FAM201A
    Protein Accession:
    Q5SY85

    Protein attributes for FAM201A Gene

    Size:
    155 amino acids
    Molecular mass:
    16478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM201A Gene

Post-translational modifications for FAM201A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM201A Gene

Domains & Families for FAM201A Gene

Protein Domains for FAM201A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM201A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM201A: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM201A Gene

Function for FAM201A Gene

Phenotypes for FAM201A Gene

GenomeRNAi human phenotypes for FAM201A:
genes like me logo Genes that share phenotypes with FAM201A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM201A Gene

Localization for FAM201A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM201A gene
Compartment Confidence
extracellular 2
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM201A Gene

Pathways & Interactions for FAM201A Gene

SuperPathways for FAM201A Gene

No Data Available

Interacting Proteins for FAM201A Gene

Gene Ontology (GO) - Biological Process for FAM201A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM201A Gene

Drugs & Compounds for FAM201A Gene

No Compound Related Data Available

Transcripts for FAM201A Gene

mRNA/cDNA for FAM201A Gene

(4) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM201A Gene

Family with sequence similarity 201, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM201A Gene

No ASD Table

Relevant External Links for FAM201A Gene

GeneLoc Exon Structure for
FAM201A
ECgene alternative splicing isoforms for
FAM201A

Expression for FAM201A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM201A Gene

mRNA differential expression in normal tissues according to GTEx for FAM201A Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.2) and Brain - Nucleus accumbens (basal ganglia) (x4.9).

Protein differential expression in normal tissues from HIPED for FAM201A Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM201A Gene



Protein tissue co-expression partners for FAM201A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM201A Gene:

FAM201A

SOURCE GeneReport for Unigene cluster for FAM201A Gene:

Hs.632652
genes like me logo Genes that share expression patterns with FAM201A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM201A Gene

Orthologs for FAM201A Gene

Evolution for FAM201A Gene

ENSEMBL:
Gene Tree for FAM201A (if available)
TreeFam:
Gene Tree for FAM201A (if available)

No data available for Orthologs for FAM201A Gene

Paralogs for FAM201A Gene

No data available for Paralogs for FAM201A Gene

Variants for FAM201A Gene

Sequence variations from dbSNP and Humsavar for FAM201A Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000037044 -- 38,623,399(+) G/A/C/T downstream_transcript_variant
rs1001431459 -- 38,622,352(+) T/C non_coding_transcript_variant
rs1002133503 -- 38,622,675(+) T/C non_coding_transcript_variant
rs1003892492 -- 38,623,768(+) C/G downstream_transcript_variant
rs1004264546 -- 38,623,500(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM201A Gene

Variant ID Type Subtype PubMed ID
nsv982218 CNV duplication 23825009
nsv8445 CNV gain+loss 18304495
nsv1028978 CNV loss 25217958
nsv1020605 CNV gain 25217958
esv3620429 CNV loss 21293372
esv27275 CNV loss 19812545
dgv261e55 CNV loss 17911159
dgv12686n54 CNV gain 21841781

Additional Variant Information for FAM201A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM201A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM201A Gene

Disorders for FAM201A Gene

Additional Disease Information for FAM201A

No disorders were found for FAM201A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM201A Gene

Publications for FAM201A Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. (PMID: 25158072) Yu D … Pauls DL (The American journal of psychiatry 2015) 3 58
  4. FGF2 and FAM201A affect the development of osteonecrosis of the femoral head after femoral neck fracture. (PMID: 29382571) Huang G … Shi J (Gene 2018) 3

Products for FAM201A Gene

Sources for FAM201A Gene

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