Aliases for FAM198B-AS1 Gene

Data sources for FAM198B-AS1 Gene:

Subcategory (RNA class) for FAM198B-AS1 Gene

lncRNA

Aliases for FAM198B-AS1 Gene

External Ids for FAM198B-AS1 Gene

Summaries for FAM198B-AS1 Gene

GeneCards Summary for FAM198B-AS1 Gene

FAM198B-AS1 (FAM198B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM198B-AS1 include Ovarian Cyst.

Additional gene information for FAM198B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM198B-AS1 Gene

Genomics for FAM198B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM198B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM198B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM198B-AS1 Gene

Latest Assembly
chr4:158,170,468-158,204,057
(GRCh38/hg38)
Size:
33,590 bases
Orientation:
Plus strand

Previous Assembly
chr4:159,091,904-159,124,029
(GRCh37/hg19 by Entrez Gene)
Size:
32,126 bases
Orientation:
Plus strand

chr4:159,091,904-159,124,029
(GRCh37/hg19 by Ensembl)
Size:
32,126 bases
Orientation:
Plus strand

Genomic View for FAM198B-AS1 Gene

Genes around FAM198B-AS1 on UCSC Golden Path with GeneCards custom track
FAM198B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM198B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM198B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM198B-AS1 Gene

Proteins for FAM198B-AS1 Gene

Post-translational modifications for FAM198B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM198B-AS1 Gene

Domains & Families for FAM198B-AS1 Gene

Gene Families for FAM198B-AS1 Gene

genes like me logo Genes that share domains with FAM198B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM198B-AS1 Gene

Function for FAM198B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM198B-AS1 Gene

Localization for FAM198B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM198B-AS1 Gene

Pathways & Interactions for FAM198B-AS1 Gene

PathCards logo

SuperPathways for FAM198B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM198B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM198B-AS1 Gene

Drugs & Compounds for FAM198B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM198B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM198B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002D033D_9606 lncRNA 2917 4

RefSeq: NR_147407,

Ensembl: ENST00000503611 (view in UCSC) ,

LncBook: HSALNT0080028,

NONCODE: NONHSAT098981.2,

URS0000096982_9606 lncRNA 762 4

Ensembl: ENST00000514381 (view in UCSC) ,

LncBook: HSALNT0080041,

LNCipedia: FAM198B-AS1:23,

NONCODE: NONHSAT098987.2,

URS000023DB40_9606 lncRNA 2724 3

Ensembl: ENST00000508752 (view in UCSC) ,

LncBook: HSALNT0080048,

LNCipedia: FAM198B-AS1:30,

URS00001A455C_9606 lncRNA 2227 3

Ensembl: ENST00000505532 (view in UCSC) ,

LncBook: HSALNT0080037,

NONCODE: NONHSAT098986.2,

URS0000039434_9606 lncRNA 692 3

Ensembl: ENST00000509463 (view in UCSC) ,

LncBook: HSALNT0080035,

NONCODE: NONHSAT098985.2,

FAM198B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM198B-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM198B-AS1 Gene

No ASD Table

Relevant External Links for FAM198B-AS1 Gene

GeneLoc Exon Structure for
FAM198B-AS1

Expression for FAM198B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM198B-AS1 Gene

Orthologs for FAM198B-AS1 Gene

Evolution for FAM198B-AS1 Gene

ENSEMBL:
Gene Tree for FAM198B-AS1 (if available)
TreeFam:
Gene Tree for FAM198B-AS1 (if available)

No data available for Orthologs for FAM198B-AS1 Gene

Paralogs for FAM198B-AS1 Gene

No data available for Paralogs for FAM198B-AS1 Gene

Variants for FAM198B-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM198B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for FAM198B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM198B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM198B-AS1 Gene

Disorders for FAM198B-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM198B-AS1 Gene - From: GCD

Disorder Aliases PubMed IDs
ovarian cyst
  • ovarian cysts
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM198B-AS1

genes like me logo Genes that share disorders with FAM198B-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM198B-AS1 Gene

Publications for FAM198B-AS1 Gene

  1. LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer. (PMID: 27941916) Wang H … Xu P (Scientific reports 2016) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for FAM198B-AS1 Gene

Products for FAM198B-AS1 Gene

Sources for FAM198B-AS1 Gene