FAM198B-AS1 Gene (RNA Gene)

FAM198B Antisense RNA 1

GC04P158171
GIFtS:
10
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Aliases for FAM198B-AS1 Gene

Data sources for FAM198B-AS1 Gene:

Subcategory (RNA class) for FAM198B-AS1 Gene

lncRNA

Aliases for FAM198B-AS1 Gene

External Ids for FAM198B-AS1 Gene

Summaries for FAM198B-AS1 Gene

GeneCards Summary for FAM198B-AS1 Gene

FAM198B-AS1 (FAM198B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM198B-AS1 include Ovarian Cyst.

Additional gene information for FAM198B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM198B-AS1 Gene

Genomics for FAM198B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for FAM198B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM198B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM198B-AS1 Gene

Latest Assembly
chr4:158,170,468-158,204,057
(GRCh38/hg38)
Size:
33,590 bases
Orientation:
Plus strand

Previous Assembly
chr4:159,091,904-159,124,029
(GRCh37/hg19 by Entrez Gene)
Size:
32,126 bases
Orientation:
Plus strand

chr4:159,091,904-159,124,029
(GRCh37/hg19 by Ensembl)
Size:
32,126 bases
Orientation:
Plus strand

Genomic View for FAM198B-AS1 Gene

Genes around FAM198B-AS1 on UCSC Golden Path with GeneCards custom track
FAM198B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM198B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM198B-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM198B-AS1 Gene

Proteins for FAM198B-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for FAM198B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM198B-AS1 Gene

Domains & Families for FAM198B-AS1 Gene

Gene Families for FAM198B-AS1 Gene

HGNC:
genes like me logo Genes that share domains with FAM198B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM198B-AS1 Gene

Function for FAM198B-AS1 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM198B-AS1 Gene

Localization for FAM198B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM198B-AS1 Gene

Pathways & Interactions for FAM198B-AS1 Gene

PathCards logo

SuperPathways for FAM198B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM198B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM198B-AS1 Gene

Drugs & Compounds for FAM198B-AS1 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for FAM198B-AS1 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM198B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002D033D_9606 lncRNA 2917 4

RefSeq: NR_147407,

Ensembl: ENST00000503611 (view in UCSC) ,

LncBook: HSALNT0080028,

NONCODE: NONHSAT098981.2,

URS0000096982_9606 lncRNA 762 4

Ensembl: ENST00000514381 (view in UCSC) ,

LncBook: HSALNT0080041,

LNCipedia: FAM198B-AS1:23,

NONCODE: NONHSAT098987.2,

URS000023DB40_9606 lncRNA 2724 3

Ensembl: ENST00000508752 (view in UCSC) ,

LncBook: HSALNT0080048,

LNCipedia: FAM198B-AS1:30,

URS00001A455C_9606 lncRNA 2227 3

Ensembl: ENST00000505532 (view in UCSC) ,

LncBook: HSALNT0080037,

NONCODE: NONHSAT098986.2,

URS0000039434_9606 lncRNA 692 3

Ensembl: ENST00000509463 (view in UCSC) ,

LncBook: HSALNT0080035,

NONCODE: NONHSAT098985.2,

FAM198B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM198B-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM198B-AS1 Gene

No ASD Table

Relevant External Links for FAM198B-AS1 Gene

GeneLoc Exon Structure for
FAM198B-AS1

Expression for FAM198B-AS1 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM198B-AS1 Gene

Orthologs for FAM198B-AS1 Gene

Evolution for FAM198B-AS1 Gene

ENSEMBL:
Gene Tree for FAM198B-AS1 (if available)
TreeFam:
Gene Tree for FAM198B-AS1 (if available)

No data available for Orthologs for FAM198B-AS1 Gene

Paralogs for FAM198B-AS1 Gene

No data available for Paralogs for FAM198B-AS1 Gene

Variants for FAM198B-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM198B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for FAM198B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM198B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM198B-AS1 Gene

Disorders for FAM198B-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM198B-AS1 Gene - From: GCD

Disorder Aliases PubMed IDs
ovarian cyst
  • ovarian cysts
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM198B-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with FAM198B-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM198B-AS1 Gene

Publications for FAM198B-AS1 Gene

  1. LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer. (PMID: 27941916) Wang H … Xu P (Scientific reports 2016) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for FAM198B-AS1 Gene

Products for FAM198B-AS1 Gene

Sources for FAM198B-AS1 Gene