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Aliases for FAM183BP Gene

Aliases for FAM183BP Gene

  • Family With Sequence Similarity 183 Member B, Pseudogene 2 5
  • Family With Sequence Similarity 183, Member B 2 3
  • Testis Highly Expressed Protein 6 3 4
  • FAM183B 3 4
  • THEG6 3 4
  • Family With Sequence Similarity 183, Member B, Pseudogene 2
  • Acyloxyacyl Hydrolase (Neutrophil) 3
  • Protein FAM183B 3

External Ids for FAM183BP Gene

Previous HGNC Symbols for FAM183BP Gene

  • FAM183B

Summaries for FAM183BP Gene

GeneCards Summary for FAM183BP Gene

FAM183BP (Family With Sequence Similarity 183 Member B, Pseudogene) is a Pseudogene.

Additional gene information for FAM183BP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM183BP Gene

Genomics for FAM183BP Gene

GeneHancer (GH) Regulatory Elements for FAM183BP Gene

Promoters and enhancers for FAM183BP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I038797 Enhancer 0.6 ENCODE 9.5 -110.0 -110007 0.2 CTCF ZNF654 RB1 TRIM22 REST RAD21 GATA3 SMC3 VPS41 LOC105375240 YAE1D1 FAM183BP GC07M038790 GC07P038746 GC07P038849
GH07I038463 Enhancer 0.5 ENCODE 9.8 +223.5 223477 1 STAT1 NFIC SMAD1 STAT2 BCL6B JUNB AMPH FAM183BP RN7SL83P TRGV1
GH07I039465 Enhancer 0.8 ENCODE 4.4 -778.1 -778078 0.2 PKNOX1 BATF IRF4 RAD21 YY1 ARID2 ZNF143 RUNX3 MIXL1 ZNF654 VPS41 LOC105375240 YAE1D1 FAM183BP LOC105375238 POU6F2-AS1 POU6F2
GH07I038657 Enhancer 0.3 FANTOM5 11.7 +29.9 29915 0.1 FAM183BP AMPH STARD3NL KRT8P20
GH07I038655 Enhancer 0.3 FANTOM5 11.7 +31.2 31210 0.2 KRT8P20 FAM183BP AMPH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM183BP on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM183BP Gene

Genomic Locations for FAM183BP Gene
chr7:38,685,346-38,687,089
(GRCh38/hg38)
Size:
1,744 bases
Orientation:
Minus strand
chr7:38,724,946-38,726,689
(GRCh37/hg19)

Genomic View for FAM183BP Gene

Genes around FAM183BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM183BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM183BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM183BP Gene

Proteins for FAM183BP Gene

  • Protein details for FAM183BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZVS7-F183B_HUMAN
    Recommended name:
    Protein FAM183BP
    Protein Accession:
    Q6ZVS7
    Secondary Accessions:
    • A4D1Y1
    • C9W8M8

    Protein attributes for FAM183BP Gene

    Size:
    135 amino acids
    Molecular mass:
    16193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC85784.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for FAM183BP Gene

Post-translational modifications for FAM183BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM183BP Gene

Domains & Families for FAM183BP Gene

Protein Domains for FAM183BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM183BP Gene

Graphical View of Domain Structure for InterPro Entry

Q6ZVS7

UniProtKB/Swiss-Prot:

F183B_HUMAN :
  • Belongs to the FAM183 family.
Family:
  • Belongs to the FAM183 family.
genes like me logo Genes that share domains with FAM183BP: view

No data available for Gene Families for FAM183BP Gene

Function for FAM183BP Gene

Phenotypes for FAM183BP Gene

GenomeRNAi human phenotypes for FAM183BP:
genes like me logo Genes that share phenotypes with FAM183BP: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM183BP Gene

Localization for FAM183BP Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM183BP gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM183BP Gene

Pathways & Interactions for FAM183BP Gene

SuperPathways for FAM183BP Gene

No Data Available

Interacting Proteins for FAM183BP Gene

Gene Ontology (GO) - Biological Process for FAM183BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM183BP Gene

Drugs & Compounds for FAM183BP Gene

No Compound Related Data Available

Transcripts for FAM183BP Gene

mRNA/cDNA for FAM183BP Gene

(1) REFSEQ mRNAs :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM183BP Gene

No ASD Table

Relevant External Links for FAM183BP Gene

GeneLoc Exon Structure for
FAM183BP
ECgene alternative splicing isoforms for
FAM183BP

Expression for FAM183BP Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM183BP Gene

Orthologs for FAM183BP Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM183BP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM183B 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM183A 34
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Fam183b 34
  • 77 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 75 (a)
ManyToMany
-- 34
  • 72 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 71 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves FAM183A 34
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii FAM183B 34
  • 43 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 43 (a)
OneToMany
Species where no ortholog for FAM183BP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM183BP Gene

ENSEMBL:
Gene Tree for FAM183BP (if available)
TreeFam:
Gene Tree for FAM183BP (if available)

Paralogs for FAM183BP Gene

No data available for Paralogs for FAM183BP Gene

Variants for FAM183BP Gene

Sequence variations from dbSNP and Humsavar for FAM183BP Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000614886 -- 38,689,028(-) A/G upstream_transcript_variant
rs1001602790 -- 38,685,866(-) C/T non_coding_transcript_variant
rs1001655141 -- 38,686,118(-) A/T non_coding_transcript_variant
rs1003003474 -- 38,687,654(-) C/T upstream_transcript_variant
rs1003057354 -- 38,687,328(-) A/G upstream_transcript_variant

Variation tolerance for FAM183BP Gene

Gene Damage Index Score: 0.15; 3.45% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM183BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM183BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM183BP Gene

Disorders for FAM183BP Gene

Additional Disease Information for FAM183BP

No disorders were found for FAM183BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM183BP Gene

Publications for FAM183BP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAM183BP Gene

Sources for FAM183BP Gene

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