Aliases for FAM181A-AS1 Gene

Data sources for FAM181A-AS1 Gene:

Subcategory (RNA class) for FAM181A-AS1 Gene

lncRNA

Aliases for FAM181A-AS1 Gene

External Ids for FAM181A-AS1 Gene

Previous HGNC Symbols for FAM181A-AS1 Gene

  • C14orf86

Previous GeneCards Identifiers for FAM181A-AS1 Gene

  • GC14M094372
  • GC14M093905
  • GC14M093941
  • GC14M094082

Summaries for FAM181A-AS1 Gene

GeneCards Summary for FAM181A-AS1 Gene

FAM181A-AS1 (FAM181A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM181A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM181A-AS1 Gene

Genomics for FAM181A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM181A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J093927 Promoter/Enhancer 1.1 EPDnew Ensembl CraniofacialAtlas 250.7 +0.0 39 1.7 CEBPA CEBPG HLF RFX1 RBFOX2 FAM181A-AS1 FAM181A ASB2 CCDC197
GH14J093329 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.1 +595.3 595254 5.4 MXD4 FEZF1 CEBPA MNT IKZF1 SMAD5 CTCF BRCA1 BHLHE40 ZNF610 BTBD7 UNC79 HSALNG0103309 HSALNG0103310 COX8C FAM181A-AS1 HE855966 UBR7
GH14J093953 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.9 -32.9 -32934 13.2 ZBTB10 BCL11A SP1 MXD4 FEZF1 CEBPA NR2C1 ZNF217 POLR2A BHLHE40 BTBD7 SERPINA1 CCDC197 IFI27L2 IFI27 RPSAP4 FAM181A-AS1 ASB2 DDX24 lnc-CCDC197-2
GH14J093939 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.2 -12.5 -12535 1.2 CTCF REST TRIM22 SMC3 RAD21 SMARCA5 MAX BHLHE40 MAZ ZNF24 ENSG00000258987 HSALNG0103331 FAM181A-AS1 MIR4506 FAM181A ASB2 lnc-DDX24-1
GH14J093905 Enhancer 0.8 Ensembl 5.6 +21.3 21265 1.2 HOMEZ ZNF511 SMAD4 SAP130 ZSCAN9 ETV4 RARA TEAD3 BCL6 JUND BTBD7 ASB2 CCDC197 FAM181A-AS1 ENSG00000279593 FAM181A PRIMA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM181A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM181A-AS1 Gene

Latest Assembly
chr14:93,904,228-93,927,066
(GRCh38/hg38)
Size:
22,839 bases
Orientation:
Minus strand

Previous Assembly
chr14:94,371,076-94,392,718
(GRCh37/hg19 by Entrez Gene)
Size:
21,643 bases
Orientation:
Minus strand

chr14:94,371,076-94,393,412
(GRCh37/hg19 by Ensembl)
Size:
22,337 bases
Orientation:
Minus strand

Genomic View for FAM181A-AS1 Gene

Genes around FAM181A-AS1 on UCSC Golden Path with GeneCards custom track
FAM181A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM181A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM181A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM181A-AS1 Gene

Proteins for FAM181A-AS1 Gene

Post-translational modifications for FAM181A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM181A-AS1 Gene

Domains & Families for FAM181A-AS1 Gene

Gene Families for FAM181A-AS1 Gene

genes like me logo Genes that share domains with FAM181A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM181A-AS1 Gene

Function for FAM181A-AS1 Gene

Phenotypes From GWAS Catalog for FAM181A-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM181A-AS1 Gene

Localization for FAM181A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM181A-AS1 Gene

Pathways & Interactions for FAM181A-AS1 Gene

PathCards logo

SuperPathways for FAM181A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM181A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM181A-AS1 Gene

Drugs & Compounds for FAM181A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM181A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM181A-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C283B_9606 lncRNA 2413 4

Ensembl: ENST00000554742 (view in UCSC) ,

LncBook: HSALNT0214952, HSALNT0214953,

LNCipedia: FAM181A-AS1:3,

NONCODE: NONHSAT039352.2,

URS00007BC488_9606 lncRNA 526 4

Ensembl: ENST00000556290 (view in UCSC) ,

LncBook: HSALNT0214964,

LNCipedia: FAM181A-AS1:4,

NONCODE: NONHSAT039355.2,

URS00007DC2BF_9606 lncRNA 545 3

Ensembl: ENST00000554538 (view in UCSC) ,

LNCipedia: FAM181A-AS1:2,

NONCODE: NONHSAT039356.2,

URS0000CCDFA7_9606 lncRNA 2398 1

RefSeq: NR_027004,

URS0000DB7003_9606 lncRNA 1904 1

Ensembl: ENST00000555732 (view in UCSC) ,

FAM181A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM181A-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM181A-AS1 Gene

No ASD Table

Relevant External Links for FAM181A-AS1 Gene

GeneLoc Exon Structure for
FAM181A-AS1

Expression for FAM181A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM181A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM181A-AS1 Gene

This gene is overexpressed in Testis (x22.0) and Muscle - Skeletal (x9.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM181A-AS1

SOURCE GeneReport for Unigene cluster for FAM181A-AS1 Gene:

Hs.585648
genes like me logo Genes that share expression patterns with FAM181A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM181A-AS1 Gene

Orthologs for FAM181A-AS1 Gene

Evolution for FAM181A-AS1 Gene

ENSEMBL:
Gene Tree for FAM181A-AS1 (if available)
TreeFam:
Gene Tree for FAM181A-AS1 (if available)

No data available for Orthologs for FAM181A-AS1 Gene

Paralogs for FAM181A-AS1 Gene

No data available for Paralogs for FAM181A-AS1 Gene

Variants for FAM181A-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM181A-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FAM181A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3635371 CNV loss 21293372
esv3635372 CNV loss 21293372
nsv521206 CNV loss 19592680
nsv832861 CNV loss 17160897

Additional Variant Information for FAM181A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM181A-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM181A-AS1 Gene

Disorders for FAM181A-AS1 Gene

Additional Disease Information for FAM181A-AS1

No disorders were found for FAM181A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM181A-AS1 Gene

Publications for FAM181A-AS1 Gene

  1. LncRNA FAM181A-AS1 promotes gliomagenesis by sponging miR-129-5p and upregulating ZRANB2. (PMID: 33080570) Jiang X … Chen D (Aging 2020) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAM181A-AS1 Gene

Sources for FAM181A-AS1 Gene