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FAM171A1 (Family With Sequence Similarity 171 Member A1) is a Protein Coding gene. An important paralog of this gene is FAM171A2.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH10J015368 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas | 616.8 | +4.2 | 4232 | 3.4 | HNRNPL CTCF RBFOX2 POLR2A PATZ1 ZNF600 ZFX ZNF792 ARNT ZBTB20 | FAM171A1 piR-61101-044 NMT2 | |
GH10J015374 | Enhancer | 0.7 | FANTOM5 Ensembl | 600.7 | -0.2 | -169 | 1.8 | PRDM10 ZNF600 ZBTB20 JUN PRDM6 ZNF384 JUND | FAM171A1 RF00017-603 ITGA8 | |
GH10J015373 | Enhancer | 0.4 | Ensembl | 600.7 | +1.0 | 1031 | 0.2 | KDM1A BCOR ZMYM3 | FAM171A1 piR-61101-044 NMT2 | |
GH10J015344 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE | 23.2 | +28.6 | 28631 | 3.8 | GATAD2A ATF7 PRDM10 ZNF629 LEF1 SOX13 ZNF692 RCOR2 ZNF7 JUND | FAM171A1 NMT2 piR-61101-044 | |
GH10J015333 | Enhancer | 1 | Ensembl ENCODE | 20.8 | +39.8 | 39835 | 3.4 | GATAD2A TFE3 NFKBIZ RCOR2 PRDM1 RXRB IRF2 SP1 CEBPA SOX13 | FAM171A1 piR-61101-044 NMT2 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005515 | protein binding | IPI | 30312582 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005886 | plasma membrane | IEA,IDA | 30312582 |
GO:0016020 | membrane | IEA | -- |
GO:0016021 | integral component of membrane | IEA | -- |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0008360 | regulation of cell shape | IMP | 30312582 |
GO:0043149 | stress fiber assembly | IMP | 30312582 |
ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | |||||||||||||||||||||||||
SP2: | |||||||||||||||||||||||||||
SP3: | - | - | |||||||||||||||||||||||||
SP4: |
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | FAM171A1 30 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | C13H10ORF38 31 |
|
OneToOne | |
FAM171A1 30 |
|
||||
Dog (Canis familiaris) |
Mammalia | FAM171A1 30 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Fam171a1 30 17 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | FAM171A1 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Fam171a1 30 |
|
||
Platypus (Ornithorhynchus anatinus) |
Mammalia | FAM171A1 31 |
|
OneToOne | |
Chicken (Gallus gallus) |
Aves | FAM171A1 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | FAM171A1 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | fam171a1 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | fam171a1 30 31 |
|
OneToOne |
SNP ID | Clinical significance and condition | Chr 10 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs3814165 | - | p.Pro465Ser |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv1057266 | CNV | insertion | 17803354 |
esv1481642 | CNV | deletion | 17803354 |
esv2080157 | CNV | deletion | 18987734 |
esv2502312 | CNV | deletion | 19546169 |
esv2733528 | CNV | deletion | 23290073 |
esv2733539 | CNV | deletion | 23290073 |
esv2733550 | CNV | deletion | 23290073 |
esv3622441 | CNV | loss | 21293372 |
esv3622442 | CNV | loss | 21293372 |
esv4462 | CNV | loss | 18987735 |
nsv1068676 | CNV | deletion | 25765185 |
nsv1069455 | CNV | deletion | 25765185 |
nsv1115157 | CNV | deletion | 24896259 |
nsv1118161 | CNV | deletion | 24896259 |
nsv1132838 | CNV | insertion | 24896259 |
nsv1135770 | CNV | deletion | 24896259 |
nsv1150152 | CNV | deletion | 26484159 |
nsv1151586 | CNV | insertion | 26484159 |
nsv1152247 | CNV | insertion | 26484159 |
nsv466755 | CNV | gain | 19166990 |
nsv466756 | CNV | loss | 19166990 |
nsv472939 | CNV | novel sequence insertion | 20440878 |
nsv509344 | CNV | insertion | 20534489 |
nsv523449 | CNV | loss | 19592680 |
nsv550016 | CNV | gain | 21841781 |
nsv550017 | CNV | loss | 21841781 |
nsv5921 | CNV | insertion | 18451855 |
nsv956150 | CNV | deletion | 24416366 |
No disorders were found for FAM171A1 Gene.