Aliases for FAM170B-AS1 Gene

Subcategory (RNA class) for FAM170B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM170B-AS1 Gene

  • FAM170B Antisense RNA 1 2 3 5
  • FAM170B-AS1 2 5 165
  • NONHSAG005862.2 91
  • HSALNG0077864 164

External Ids for FAM170B-AS1 Gene

Previous GeneCards Identifiers for FAM170B-AS1 Gene

  • GC10P050331

Summaries for FAM170B-AS1 Gene

GeneCards Summary for FAM170B-AS1 Gene

FAM170B-AS1 (FAM170B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM170B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM170B-AS1 Gene

Genomics for FAM170B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM170B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049121 Promoter 0.4 EPDnew 600.7 +0.2 194 0.1 EHMT2 FAM170B-AS1 VSTM4 piR-61580-060 LRRC18
GH10J049078 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 -39.9 -39869 5.7 ZIC2 SP1 SCRT2 HMBOX1 FOXA2 ZNF316 MAFF YY1 ZBTB33 JUND FAM170B VSTM4 FAM170B-AS1 ENSG00000226576 LRRC18 lnc-FAM170B-4 piR-33313-002
GH10J049076 Enhancer 0.9 Ensembl dbSUPER 11.5 -44.5 -44458 0.8 IKZF2 SP1 PKNOX1 RELA EED DPF2 RELB RUNX3 GATAD2B FOXA2 lnc-FAM170B-4 FAM170B VSTM4 FAM170B-AS1 LRRC18 L13714-036
GH10J049212 Enhancer 0.8 Ensembl 11 +91.0 91043 1 RNF2 ARHGAP35 ZNF512 IKZF1 MTA2 PKNOX1 MTA1 NR2C1 ZNF24 DPF2 TMEM273 WASHC2A DRGX FAM170B-AS1 C10orf71 C10orf71-AS1 TIMM23B-AGAP6 VSTM4 piR-47086-034
GH10J049008 Enhancer 0.7 Ensembl ENCODE 11.4 -111.7 -111657 4.4 NR2C2 NR2F2 POLR2A NR2F1 NR2F6 MEIS2 SMARCA4 L3MBTL2 CBFA2T2 NR2C1 VSTM4 FAM170B ENSG00000226576 FAM170B-AS1 WDFY4 DRGX LRRC18 ENSG00000241577 lnc-LRRC18-110 ENSG00000233665
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM170B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM170B-AS1 Gene

Genomic Locations for FAM170B-AS1 Gene
chr10:49,121,658-49,151,548
(GRCh38/hg38)
Size:
29,891 bases
Orientation:
Plus strand
chr10:50,329,884-50,359,592
(GRCh37/hg19)
Size:
29,709 bases
Orientation:
Plus strand

Genomic View for FAM170B-AS1 Gene

Genes around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track
FAM170B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM170B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM170B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM170B-AS1 Gene

Proteins for FAM170B-AS1 Gene

Post-translational modifications for FAM170B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM170B-AS1 Gene

Domains & Families for FAM170B-AS1 Gene

Gene Families for FAM170B-AS1 Gene

genes like me logo Genes that share domains with FAM170B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM170B-AS1 Gene

Function for FAM170B-AS1 Gene

Phenotypes From GWAS Catalog for FAM170B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM170B-AS1 Gene

Localization for FAM170B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM170B-AS1 Gene

Pathways & Interactions for FAM170B-AS1 Gene

PathCards logo

SuperPathways for FAM170B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM170B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM170B-AS1 Gene

Drugs & Compounds for FAM170B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM170B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM170B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043585A_9606 lncRNA 2000 4

Ensembl: ENST00000442525 (view in UCSC) ,

LncBook: HSALNT0162494,

LNCipedia: FAM170B-AS1:3,

NONCODE: NONHSAT013292.2,

URS00002460FE_9606 lncRNA 1053 4

Ensembl: ENST00000443389 (view in UCSC) ,

LncBook: HSALNT0162496,

LNCipedia: FAM170B-AS1:4,

NONCODE: NONHSAT013293.2,

URS000046DA82_9606 lncRNA 474 3

Ensembl: ENST00000435809 (view in UCSC) ,

LncBook: HSALNT0162497, HSALNT0162498,

LNCipedia: FAM170B-AS1:5,

URS000075A8FF_9606 lncRNA 2000 2

HGNC: 45006,

RefSeq: NR_038973,

URS0000EF1235_9606 lncRNA 1088 1

Ensembl: ENST00000440054 (view in UCSC) ,

FAM170B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM170B-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM170B-AS1 Gene

No ASD Table

Relevant External Links for FAM170B-AS1 Gene

GeneLoc Exon Structure for
FAM170B-AS1

Expression for FAM170B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM170B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM170B-AS1 Gene

This gene is overexpressed in Testis (x46.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM170B-AS1

SOURCE GeneReport for Unigene cluster for FAM170B-AS1 Gene:

Hs.404175
genes like me logo Genes that share expression patterns with FAM170B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM170B-AS1 Gene

Orthologs for FAM170B-AS1 Gene

Evolution for FAM170B-AS1 Gene

ENSEMBL:
Gene Tree for FAM170B-AS1 (if available)
TreeFam:
Gene Tree for FAM170B-AS1 (if available)

No data available for Orthologs for FAM170B-AS1 Gene

Paralogs for FAM170B-AS1 Gene

No data available for Paralogs for FAM170B-AS1 Gene

Variants for FAM170B-AS1 Gene

Additional dbSNP identifiers (rs#s) for FAM170B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM170B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1119274 CNV deletion 17803354
esv2761593 CNV gain 21179565
esv3546258 CNV deletion 23714750
esv3623164 CNV loss 21293372
nsv1042677 CNV loss 25217958
nsv831866 CNV gain+loss 17160897

Additional Variant Information for FAM170B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM170B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM170B-AS1 Gene

Disorders for FAM170B-AS1 Gene

No disorders were found for FAM170B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM170B-AS1 Gene

Publications for FAM170B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAM170B-AS1 Gene

Sources for FAM170B-AS1 Gene