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Aliases for FAM170B-AS1 Gene

Subcategory (RNA class) for FAM170B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for FAM170B-AS1 Gene

  • FAM170B Antisense RNA 1 2 3 5

External Ids for FAM170B-AS1 Gene

Previous GeneCards Identifiers for FAM170B-AS1 Gene

  • GC10P050331

Summaries for FAM170B-AS1 Gene

GeneCards Summary for FAM170B-AS1 Gene

FAM170B-AS1 (FAM170B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM170B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM170B-AS1 Gene

Genomics for FAM170B-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM170B-AS1 Gene

Promoters and enhancers for FAM170B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049120 Enhancer 0.3 Ensembl 600.7 -1.6 -1638 0.4 GLIS1 FAM170B-AS1 VSTM4 GC10P049105
GH10J049078 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 -40.1 -40050 5.7 SP1 SMARCA4 RXRA ZIC2 FOXA2 ZNF316 SCRT2 JUND MAFG YY1 FAM170B VSTM4 FAM170B-AS1 ENSG00000226576 LRRC18 GC10M049094 PIR36323
GH10J049076 Enhancer 0.9 Ensembl dbSUPER 11.5 -44.9 -44939 1.4 SP1 CREM IKZF1 RXRA IKZF2 RELA PKNOX1 FOXA2 DPF2 EED FAM170B VSTM4 FAM170B-AS1 LRRC18 GC10M049094 PIR36323
GH10J049212 Enhancer 0.8 Ensembl 11 +90.9 90862 1 CBFA2T2 MLLT1 GTF2F1 MCM2 SMARCA4 MTA1 GMEB1 ARID2 DPF2 RNF2 TMEM273 WASHC2A DRGX FAM170B-AS1 C10orf71 C10orf71-AS1 LINC00843 VSTM4 GC10P049274
GH10J049008 Enhancer 0.7 Ensembl ENCODE 11.4 -112.1 -112070 3.5 CBFA2T2 NR2C2 POLR2A NR2F2 CBFA2T3 L3MBTL2 VSTM4 FAM170B ENSG00000226576 FAM170B-AS1 WDFY4 DRGX LRRC18 ENSG00000241577 GC10M049015 ENSG00000233665
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM170B-AS1 Gene

Genomic Locations for FAM170B-AS1 Gene
chr10:49,121,839-49,151,547
(GRCh38/hg38)
Size:
29,709 bases
Orientation:
Plus strand
chr10:50,329,884-50,359,592
(GRCh37/hg19)
Size:
29,709 bases
Orientation:
Plus strand

Genomic View for FAM170B-AS1 Gene

Genes around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM170B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM170B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM170B-AS1 Gene

Proteins for FAM170B-AS1 Gene

Post-translational modifications for FAM170B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM170B-AS1 Gene

Domains & Families for FAM170B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM170B-AS1 Gene

Function for FAM170B-AS1 Gene

Phenotypes From GWAS Catalog for FAM170B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM170B-AS1 Gene

Localization for FAM170B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM170B-AS1 Gene

Pathways & Interactions for FAM170B-AS1 Gene

PathCards logo

SuperPathways for FAM170B-AS1 Gene

No Data Available

Interacting Proteins for FAM170B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM170B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM170B-AS1 Gene

Drugs & Compounds for FAM170B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM170B-AS1 Gene

mRNA/cDNA for FAM170B-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Unigene Clusters for FAM170B-AS1 Gene

FAM170B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM170B-AS1 Gene

No ASD Table

Relevant External Links for FAM170B-AS1 Gene

GeneLoc Exon Structure for
FAM170B-AS1
ECgene alternative splicing isoforms for
FAM170B-AS1

Expression for FAM170B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM170B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM170B-AS1 Gene

This gene is overexpressed in Testis (x46.6).

SOURCE GeneReport for Unigene cluster for FAM170B-AS1 Gene:

Hs.404175
genes like me logo Genes that share expression patterns with FAM170B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM170B-AS1 Gene

Orthologs for FAM170B-AS1 Gene

Evolution for FAM170B-AS1 Gene

ENSEMBL:
Gene Tree for FAM170B-AS1 (if available)
TreeFam:
Gene Tree for FAM170B-AS1 (if available)

No data available for Orthologs for FAM170B-AS1 Gene

Paralogs for FAM170B-AS1 Gene

No data available for Paralogs for FAM170B-AS1 Gene

Variants for FAM170B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM170B-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000321421 -- 49,128,533(+) A/T intron_variant
rs1000362803 -- 49,149,364(+) T/C/G intron_variant
rs1000380010 -- 49,120,952(+) T/C upstream_transcript_variant
rs1000406652 -- 49,149,558(+) G/A intron_variant
rs1000451875 -- 49,151,231(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM170B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1119274 CNV deletion 17803354
esv2761593 CNV gain 21179565
esv3546258 CNV deletion 23714750
esv3623164 CNV loss 21293372
nsv1042677 CNV loss 25217958
nsv831866 CNV gain+loss 17160897

Additional Variant Information for FAM170B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM170B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM170B-AS1 Gene

Disorders for FAM170B-AS1 Gene

Additional Disease Information for FAM170B-AS1

No disorders were found for FAM170B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM170B-AS1 Gene

Publications for FAM170B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAM170B-AS1 Gene

Sources for FAM170B-AS1 Gene

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