Aliases for FAM167A-AS1 Gene

RNA type for FAM167A-AS1 Gene

lncRNA

Aliases for FAM167A-AS1 Gene

External Ids for FAM167A-AS1 Gene

Previous HGNC Symbols for FAM167A-AS1 Gene

  • C8orf12

Summaries for FAM167A-AS1 Gene

GeneCards Summary for FAM167A-AS1 Gene

FAM167A-AS1 (FAM167A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with FAM167A-AS1 include Keratolytic Winter Erythema.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM167A-AS1 Gene

Genomics for FAM167A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM167A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM167A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM167A-AS1 Gene

Latest Assembly
chr8:11,339,636-11,476,067
(GRCh38/hg38)
Size:
136,432 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,225,911-11,296,166
(GRCh37/hg19 by Entrez Gene)
Size:
70,256 bases
Orientation:
Plus strand

chr8:11,225,911-11,296,167
(GRCh37/hg19 by Ensembl)
Size:
70,257 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,909,911-1,978,449 (-)

Genomic View for FAM167A-AS1 Gene

Genes around FAM167A-AS1 on UCSC Golden Path with GeneCards custom track
FAM167A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
FAM167A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM167A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM167A-AS1 Gene

Proteins for FAM167A-AS1 Gene

  • Protein details for FAM167A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KT0-FAAS1_HUMAN
    Recommended name:
    Uncharacterized protein FAM167A-AS1
    Protein Accession:
    Q96KT0

    Protein attributes for FAM167A-AS1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11632 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM167A-AS1 Gene

Post-translational modifications for FAM167A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM167A-AS1 Gene

Domains & Families for FAM167A-AS1 Gene

Gene Families for FAM167A-AS1 Gene

genes like me logo Genes that share domains with FAM167A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM167A-AS1 Gene

Function for FAM167A-AS1 Gene

Phenotypes From GWAS Catalog for FAM167A-AS1 Gene

Phenotypes for FAM167A-AS1 Gene

GenomeRNAi human phenotypes for FAM167A-AS1:
genes like me logo Genes that share phenotypes with FAM167A-AS1: view

CRISPR products for research

miRNA for FAM167A-AS1 Gene

miRTarBase miRNAs that target FAM167A-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM167A-AS1 Gene

Localization for FAM167A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM167A-AS1 Gene

Pathways & Interactions for FAM167A-AS1 Gene

PathCards logo

SuperPathways for FAM167A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM167A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM167A-AS1 Gene

Drugs & Compounds for FAM167A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM167A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM167A-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B221_9606 lncRNA 1229 5

RefSeq: NR_026814,

Ensembl: ENST00000533578 (view in UCSC) ,

LncBook: HSALNT0133074,

LNCipedia: FAM167A-AS1:2,

NONCODE: NONHSAT215424.1,

URS00008BA568_9606 lncRNA 804 4

Ensembl: ENST00000529305 (view in UCSC) ,

LncBook: HSALNT0133077,

LNCipedia: FAM167A-AS1:3,

NONCODE: NONHSAT125054.2,

URS0000A93DD1_9606 lncRNA 1364 3

Ensembl: ENST00000624614 (view in UCSC) ,

LncBook: HSALNT0133079,

LNCipedia: FAM167A-AS1:5,

URS0000EF2153_9606 lncRNA 607 1

Ensembl: ENST00000655944 (view in UCSC) ,

URS00008B95CF_9606 lncRNA 1363 2

LNCipedia: FAM167A-AS1:4,

NONCODE: NONHSAT125056.2,

FAM167A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM167A-AS1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM167A-AS1 Gene

No ASD Table

Relevant External Links for FAM167A-AS1 Gene

GeneLoc Exon Structure for
FAM167A-AS1

Expression for FAM167A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM167A-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM167A-AS1

genes like me logo Genes that share expression patterns with FAM167A-AS1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM167A-AS1 Gene

Orthologs for FAM167A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM167A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C8orf12 30
  • 98 (a)
OneToOne
Species where no ortholog for FAM167A-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for FAM167A-AS1 Gene

ENSEMBL:
Gene Tree for FAM167A-AS1 (if available)
TreeFam:
Gene Tree for FAM167A-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for FAM167A-AS1

Paralogs for FAM167A-AS1 Gene

No data available for Paralogs for FAM167A-AS1 Gene

Variants for FAM167A-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for FAM167A-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for FAM167A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1171n67 CNV loss 20364138
dgv11954n54 CNV loss 21841781
dgv11955n54 CNV loss 21841781
dgv11956n54 CNV loss 21841781
dgv178e180 CNV deletion 20482838
dgv179e180 CNV loss 20482838
dgv3771n106 CNV deletion 24896259
dgv3772n106 CNV deletion 24896259
dgv56n50 CNV loss 21212237
esv2383612 CNV deletion 18987734
esv25027 CNV loss 19812545
esv2645386 CNV deletion 19546169
esv2659992 CNV deletion 23128226
esv3273496 CNV deletion 24192839
esv3302913 CNV tandem duplication 20981092
esv33097 CNV gain 17666407
esv33920 CNV loss 17666407
esv34097 CNV loss 18971310
esv3543052 CNV deletion 23714750
esv3572512 CNV loss 25503493
esv3616248 CNV loss 21293372
esv3616249 CNV loss 21293372
nsv1030756 CNV gain 25217958
nsv1033312 CNV loss 25217958
nsv1115062 CNV deletion 24896259
nsv398266 CNV deletion 16902084
nsv465465 CNV loss 19166990
nsv470183 CNV loss 18288195
nsv471964 CNV novel sequence insertion 20440878
nsv475649 CNV novel sequence insertion 20440878
nsv509252 CNV insertion 20534489
nsv522860 CNV loss 19592680
nsv610274 CNV loss 21841781
nsv610275 CNV loss 21841781
nsv610278 CNV gain+loss 21841781
nsv824534 CNV loss 20364138
nsv831233 CNV gain 17160897
nsv951099 CNV deletion 24416366
nsv982122 CNV deletion 23825009

Variation tolerance for FAM167A-AS1 Gene

Gene Damage Index Score: 3.18; 51.89% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM167A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM167A-AS1
Leiden Open Variation Database (LOVD)
FAM167A-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for FAM167A-AS1 Gene

Disorders for FAM167A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM167A-AS1 Gene - From: GCD

Disorder Aliases PubMed IDs
keratolytic winter erythema
  • kwe
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM167A-AS1

genes like me logo Genes that share disorders with FAM167A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM167A-AS1 Gene

Publications for FAM167A-AS1 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3
  2. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 4
  3. Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759. (PMID: 11896452) Appel S … Rosenthal A (European journal of human genetics : EJHG 2002) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for FAM167A-AS1 Gene

Sources for FAM167A-AS1 Gene