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FAM157C Gene(RNA Gene)

Family With Sequence Similarity 157 Member C (Non-Protein Coding)

GCID:
GC16P090102
GIFtS:
14
Genes Participants
UDN Logo

Aliases for FAM157C Gene

Subcategory (RNA class) for FAM157C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM157C Gene

  • Family With Sequence Similarity 157 Member C (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 157, Member C 2
  • Family With Sequence Similarity 157 Member C 2

External Ids for FAM157C Gene

Previous GeneCards Identifiers for FAM157C Gene

  • GC16P088695
  • GC16P090167

Summaries for FAM157C Gene

GeneCards Summary for FAM157C Gene

FAM157C (Family With Sequence Similarity 157 Member C (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM157C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM157C Gene

Genomics for FAM157C Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for FAM157C Gene

Promoters and enhancers for FAM157C Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I090098 Enhancer 0.5 Ensembl 550.8 -0.9 -863 6 ZNF316 ZNF10 SCRT2 NFE2 FOS EMSY FAM157C GC16M090102 LOC105376786 GAS8 DEF8 TUBB8P7 DBNDD1
GH16I090081 Enhancer 1.2 Ensembl ENCODE 5.2 -19.9 -19887 1.6 HDGF SMAD1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 ZNF143 DEK DEF8 CDK10 ENSG00000261172 TUBB8P7 FANCA FAM157C PRDM7 URAHP
GH16I090106 Promoter/Enhancer 1.1 Ensembl ENCODE 0.8 +4.6 4636 1 BCOR CTCF ATF1 NRF1 REST ZEB2 ZNF592 CTBP1 ATF7 ZBTB33 ENSG00000260507 CDK10 FAM157C GC16P090135
GH16I090167 Enhancer 0.9 ENCODE 0.2 +66.1 66110 1.3 HDGF PKNOX1 ATF1 MLX ARID4B ZNF48 ATF7 SP5 ZNF592 ATF4 GC16P090181 GC16P090182 GC16P090183 GC16P090205 GC16P090208 GC16P090210 GC16P090215 PIR33899 ENSG00000261172 GAS8
GH16I090108 Enhancer 0.2 Ensembl 0.4 +6.4 6437 0.2 ENSG00000260507 FAM157C GC16P090135
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM157C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM157C gene promoter:

Genomic Locations for FAM157C Gene

Genomic Locations for FAM157C Gene
chr16:90,102,264-90,178,344
(GRCh38/hg38)
Size:
76,081 bases
Orientation:
Plus strand
chr16:90,168,679-90,244,752
(GRCh37/hg19)

Genomic View for FAM157C Gene

Genes around FAM157C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM157C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM157C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM157C Gene

Proteins for FAM157C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAM157C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CG43-F157C_HUMAN
    Recommended name:
    Putative protein FAM157C
    Protein Accession:
    P0CG43

    Protein attributes for FAM157C Gene

    Size:
    387 amino acids
    Molecular mass:
    43408 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM157C Gene

Post-translational modifications for FAM157C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM157C Gene

Domains & Families for FAM157C Gene

Protein Domains for FAM157C Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM157C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CG43

UniProtKB/Swiss-Prot:

F157C_HUMAN :
  • Belongs to the FAM157 family.
Family:
  • Belongs to the FAM157 family.
genes like me logo Genes that share domains with FAM157C: view

No data available for Gene Families for FAM157C Gene

Function for FAM157C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM157C Gene

Localization for FAM157C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM157C Gene

Pathways & Interactions for FAM157C Gene

SuperPathways for FAM157C Gene

PathCards logo More details on SuperPathways for FAM157C
No Data Available

Interacting Proteins for FAM157C Gene

Gene Ontology (GO) - Biological Process for FAM157C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM157C Gene

Drugs & Compounds for FAM157C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM157C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FAM157C Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM157C Gene

No ASD Table

Relevant External Links for FAM157C Gene

GeneLoc Exon Structure for
FAM157C
ECgene alternative splicing isoforms for
FAM157C

Expression for FAM157C Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM157C Gene

mRNA expression in normal human tissues for FAM157C Gene
mRNA expression by GTEx for FAM157C Gene

mRNA differential expression in normal tissues according to GTEx for FAM157C Gene

This gene is overexpressed in Whole Blood (x22.8).

NURSA nuclear receptor signaling pathways regulating expression of FAM157C Gene:

FAM157C
genes like me logo Genes that share expression patterns with FAM157C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM157C Gene

Orthologs for FAM157C Gene

Evolution for FAM157C Gene

ENSEMBL:
Gene Tree for FAM157C (if available)
TreeFam:
Gene Tree for FAM157C (if available)

No data available for Orthologs for FAM157C Gene

Paralogs for FAM157C Gene

(3) SIMAP similar genes for FAM157C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM157C: view

No data available for Paralogs for FAM157C Gene

Variants for FAM157C Gene

Sequence variations from dbSNP and Humsavar for FAM157C Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000268245 -- 90,160,959(+) C/T intron_variant
rs1000319639 -- 90,163,216(+) AAAAGAAAA/AAAA intron_variant
rs1000548488 -- 90,137,149(+) T/C intron_variant
rs1000654954 -- 90,142,549(+) A/G intron_variant
rs1001641997 -- 90,104,789(+) C/G intron_variant

Additional Variant Information for FAM157C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM157C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM157C Gene

Disorders for FAM157C Gene

Additional Disease Information for FAM157C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for FAM157C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM157C Gene

Publications for FAM157C Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FAM157C Gene

Sources for FAM157C Gene

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