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Aliases for FAM157C Gene
Subcategory (RNA class) for FAM157C Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for FAM157C Gene
External Ids for FAM157C Gene
- HGNC: 34081
- Entrez Gene: 100996541
- Ensembl: ENSG00000260528
- UniProtKB: P0CG43
Previous GeneCards Identifiers for FAM157C Gene
- GC16P088695
- GC16P090167
Summaries for FAM157C Gene
GeneCards Summary for FAM157C Gene
FAM157C (Family With Sequence Similarity 157 Member C) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for FAM157C Gene
- HGNC(34081)
- Entrez Gene(100996541)
- Ensembl(ENSG00000260528)
- UniProtKB(P0CG43)
- Open Targets Platform(ENSG00000260528)
- Search for FAM157C at DataMed
- Search for FAM157C at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM157C Gene
Genomics for FAM157C Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for FAM157C Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J090106 | Promoter/Enhancer | 1.2 | EPDnew Ensembl ENCODE | 600.4 | +5.0 | 5037 | 2.2 | CTCF ZBTB33 REST CTBP1 BCOR ZNF592 NRF1 ZEB2 ATF7 ATF1 | ENSG00000260507 LOC105376786 FAM157C DEF8 CDK10 piR-58578-002 PRDM7 | |
| GH16J090098 | Promoter | 1 | EPDnew Ensembl | 600.7 | +0.6 | 637 | 1.4 | SCRT2 NFE2 ZNF316 FOS EMSY | FAM157C piR-46584-001 ENSG00000260507 LOC105376786 PRDM7 | |
| GH16J090103 | Promoter | 0.3 | Ensembl | 600.7 | +1.6 | 1637 | 0.2 | FAM157C LOC105376786 piR-46584-001 ENSG00000260507 PRDM7 | ||
| GH16J090100 | Promoter | 0.3 | Ensembl | 600.7 | -1.8 | -1763 | 0.6 | FAM157C piR-37193-002 piR-46584-001 PRDM7 | ||
| GH16J090081 | Promoter/Enhancer | 1.3 | ENCODE CraniofacialAtlas | 5.2 | -20.0 | -20044 | 1.3 | GATAD2A CTCF PRDM10 ZNF629 IKZF1 ZNF692 TARDBP JUND FOXA1 LARP7 | lnc-GAS8-6 DEF8 CDK10 ENSG00000261172 TUBB8P7 FAM157C FANCA PRDM7 lnc-PRDM7-3 DBNDD1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around FAM157C on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the FAM157C gene promoter:
-
- E47
- HOXA9
- HOXA9B
- Meis-1
- Meis-1b
- p53
- SRF
- SRF (504 AA)
- Tal-1
- ZID
Genomic Locations for FAM157C Gene
Genomic Locations for FAM157C Gene
- chr16:90,102,264-90,178,344
- (GRCh38/hg38)
- Size:
- 76,081 bases
- Orientation:
- Plus strand
- chr16:90,168,679-90,244,752
- (GRCh37/hg19)
- Size:
- 76,074 bases
- Orientation:
- Plus strand
Genomic View for FAM157C Gene
Genes around FAM157C on UCSC Golden Path with GeneCards custom track
FAM157C in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q24.3 by HGNC
- 16q24.3 by Entrez Gene
- 16q24.3 by Ensembl
FAM157C Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM157C Gene
Proteins for FAM157C Gene
-
Protein details for FAM157C Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P0CG43-F157C_HUMAN
- Recommended name:
- Putative protein FAM157C
- Protein Accession:
- P0CG43
Protein attributes for FAM157C Gene
- Size:
- 387 amino acids
- Molecular mass:
- 43408 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for FAM157C Gene
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM157C
- Origene Custom Protein Services for FAM157C
No data available for DME Specific Peptides for FAM157C Gene
Domains & Families for FAM157C Gene
Gene Families for FAM157C Gene
Protein Domains for FAM157C Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for FAM157C Gene
- GenScript: Design optimal peptide antigens:
-
- Putative protein FAM157C (F157C_HUMAN)
Graphical View of Domain Structure for InterPro Entry
P0CG43- Family:
-
- Belongs to the FAM157 family.
Function for FAM157C Gene
Phenotypes From GWAS Catalog for FAM157C Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for FAM157C - Select products 50% OFF >
- * FAM157C CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for FAM157C
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for FAM157C - Select products 50% OFF >
- * FAM157C as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM157C Gene
Localization for FAM157C Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM157C Gene
Transcripts for FAM157C Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM157C Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00007DCC41_9606 | lncRNA | 2184 | 4 |
Ensembl: ENST00000570230 (view in UCSC) , LncBook: HSALNT0235614, LNCipedia: lnc-GAS8-1:7, NONCODE: NONHSAT144650.2, |
| URS00007E49F7_9606 | lncRNA | 961 | 4 |
HGNC: 34081, RefSeq: NR_126161, LNCipedia: FAM157C:8, NONCODE: NONHSAT173478.1, |
| URS00007D77E5_9606 | lncRNA | 561 | 4 |
Ensembl: ENST00000566898 (view in UCSC) , LncBook: HSALNT0235616, LNCipedia: lnc-GAS8-1:8, NONCODE: NONHSAT144651.2, |
| URS00007DBA2C_9606 | lncRNA | 1806 | 3 |
Ensembl: ENST00000563357 (view in UCSC) , LNCipedia: FAM157C:12, NONCODE: NONHSAT144643.2, |
| URS00007BDCB8_9606 | lncRNA | 480 | 3 |
Ensembl: ENST00000568070 (view in UCSC) , LncBook: HSALNT0235608, LNCipedia: FAM157C:13, |
FAM157C in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for FAM157C Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for FAM157C - Select products 50% OFF >
- * FAM157C CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for FAM157C
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for FAM157C - Select products 50% OFF >
- * FAM157C as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for FAM157C Gene
- GeneLoc Exon Structure for
- FAM157C
Expression for FAM157C Gene
mRNA differential expression in normal tissues according to GTEx for FAM157C Gene
This gene is overexpressed in Whole Blood (x22.8).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM157C
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM157C Gene
Orthologs for FAM157C Gene
No data available for Orthologs for FAM157C Gene
Paralogs for FAM157C Gene
(3) SIMAP similar genes for FAM157C Gene using alignment to 1 proteins:
- F157C_HUMAN
No data available for Paralogs for FAM157C Gene
Variants for FAM157C Gene
Additional Variant Information for FAM157C Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM157C
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM157C Gene
Disorders for FAM157C Gene
Additional Disease Information for FAM157C
No disorders were found for FAM157C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM157C Gene
Publications for FAM157C Gene
- The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
ExternalLinks
Products for FAM157C Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM157C
- Origene Custom Protein Services for FAM157C
- Browse OriGene Inhibitory RNA Products For FAM157C
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for FAM157C
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For FAM157C
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for FAM157C
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for FAM157C
- Search GeneCopoeia for miRNA 3'UTR Target clone products for FAM157C
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for FAM157C
Sources for FAM157C Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB