Aliases for FAM157C Gene

Subcategory (RNA class) for FAM157C Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM157C Gene

  • Family With Sequence Similarity 157 Member C 2 3 5
  • FAM157C 2 5 165
  • Family With Sequence Similarity 157 Member C (Non-Protein Coding) 2 3
  • Family With Sequence Similarity 157, Member C 2
  • Putative Protein FAM157C 4
  • NONHSAG020390.2 91
  • NONHSAG020393.2 91
  • HSALNG0113694 164
  • HSALNG0113691 164
  • Lnc-GAS8-1 165

External Ids for FAM157C Gene

Previous GeneCards Identifiers for FAM157C Gene

  • GC16P088695
  • GC16P090167

Summaries for FAM157C Gene

GeneCards Summary for FAM157C Gene

FAM157C (Family With Sequence Similarity 157 Member C) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM157C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM157C Gene

Genomics for FAM157C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM157C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J090106 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 600.4 +5.0 5037 2.2 CTCF ZBTB33 REST CTBP1 BCOR ZNF592 NRF1 ZEB2 ATF7 ATF1 ENSG00000260507 LOC105376786 FAM157C DEF8 CDK10 piR-58578-002 PRDM7
GH16J090098 Promoter 1 EPDnew Ensembl 600.7 +0.6 637 1.4 SCRT2 NFE2 ZNF316 FOS EMSY FAM157C piR-46584-001 ENSG00000260507 LOC105376786 PRDM7
GH16J090103 Promoter 0.3 Ensembl 600.7 +1.6 1637 0.2 FAM157C LOC105376786 piR-46584-001 ENSG00000260507 PRDM7
GH16J090100 Promoter 0.3 Ensembl 600.7 -1.8 -1763 0.6 FAM157C piR-37193-002 piR-46584-001 PRDM7
GH16J090081 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 5.2 -20.0 -20044 1.3 GATAD2A CTCF PRDM10 ZNF629 IKZF1 ZNF692 TARDBP JUND FOXA1 LARP7 lnc-GAS8-6 DEF8 CDK10 ENSG00000261172 TUBB8P7 FAM157C FANCA PRDM7 lnc-PRDM7-3 DBNDD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM157C on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FAM157C gene promoter:
  • E47
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1b
  • p53
  • SRF
  • SRF (504 AA)
  • Tal-1
  • ZID

Genomic Locations for FAM157C Gene

Genomic Locations for FAM157C Gene
chr16:90,102,264-90,178,344
(GRCh38/hg38)
Size:
76,081 bases
Orientation:
Plus strand
chr16:90,168,679-90,244,752
(GRCh37/hg19)
Size:
76,074 bases
Orientation:
Plus strand

Genomic View for FAM157C Gene

Genes around FAM157C on UCSC Golden Path with GeneCards custom track
FAM157C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM157C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM157C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM157C Gene

Proteins for FAM157C Gene

  • Protein details for FAM157C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CG43-F157C_HUMAN
    Recommended name:
    Putative protein FAM157C
    Protein Accession:
    P0CG43

    Protein attributes for FAM157C Gene

    Size:
    387 amino acids
    Molecular mass:
    43408 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM157C Gene

Post-translational modifications for FAM157C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM157C Gene

Domains & Families for FAM157C Gene

Gene Families for FAM157C Gene

Protein Domains for FAM157C Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM157C Gene

GenScript: Design optimal peptide antigens:
  • Putative protein FAM157C (F157C_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P0CG43

UniProtKB/Swiss-Prot:

F157C_HUMAN :
  • Belongs to the FAM157 family.
Family:
  • Belongs to the FAM157 family.
genes like me logo Genes that share domains with FAM157C: view

Function for FAM157C Gene

Phenotypes From GWAS Catalog for FAM157C Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM157C Gene

Localization for FAM157C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM157C Gene

Pathways & Interactions for FAM157C Gene

PathCards logo

SuperPathways for FAM157C Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM157C Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM157C Gene

Drugs & Compounds for FAM157C Gene

No Compound Related Data Available

Transcripts for FAM157C Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM157C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DCC41_9606 lncRNA 2184 4

Ensembl: ENST00000570230 (view in UCSC) ,

LncBook: HSALNT0235614,

LNCipedia: lnc-GAS8-1:7,

NONCODE: NONHSAT144650.2,

URS00007E49F7_9606 lncRNA 961 4

HGNC: 34081,

RefSeq: NR_126161,

LNCipedia: FAM157C:8,

NONCODE: NONHSAT173478.1,

URS00007D77E5_9606 lncRNA 561 4

Ensembl: ENST00000566898 (view in UCSC) ,

LncBook: HSALNT0235616,

LNCipedia: lnc-GAS8-1:8,

NONCODE: NONHSAT144651.2,

URS00007DBA2C_9606 lncRNA 1806 3

Ensembl: ENST00000563357 (view in UCSC) ,

LNCipedia: FAM157C:12,

NONCODE: NONHSAT144643.2,

URS00007BDCB8_9606 lncRNA 480 3

Ensembl: ENST00000568070 (view in UCSC) ,

LncBook: HSALNT0235608,

LNCipedia: FAM157C:13,

FAM157C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM157C Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM157C Gene

No ASD Table

Relevant External Links for FAM157C Gene

GeneLoc Exon Structure for
FAM157C

Expression for FAM157C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM157C Gene

mRNA differential expression in normal tissues according to GTEx for FAM157C Gene

This gene is overexpressed in Whole Blood (x22.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM157C

genes like me logo Genes that share expression patterns with FAM157C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM157C Gene

Orthologs for FAM157C Gene

Evolution for FAM157C Gene

ENSEMBL:
Gene Tree for FAM157C (if available)
TreeFam:
Gene Tree for FAM157C (if available)

No data available for Orthologs for FAM157C Gene

Paralogs for FAM157C Gene

(3) SIMAP similar genes for FAM157C Gene using alignment to 1 proteins:

  • F157C_HUMAN
genes like me logo Genes that share paralogs with FAM157C: view

No data available for Paralogs for FAM157C Gene

Variants for FAM157C Gene

Additional dbSNP identifiers (rs#s) for FAM157C Gene

Additional Variant Information for FAM157C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM157C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM157C Gene

Disorders for FAM157C Gene

No disorders were found for FAM157C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM157C Gene

Publications for FAM157C Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for FAM157C Gene

Sources for FAM157C Gene