Aliases for FAM153CP Gene

Aliases for FAM153CP Gene

  • Family With Sequence Similarity 153 Member C, Pseudogene 2 5
  • Family With Sequence Similarity 153 Member C 2 3
  • Family With Sequence Similarity 153, Member C 2
  • Protein FAM153C 3
  • NY-REN-7-Like 3
  • Lnc-FAM153C-1 170
  • NONHSAG042389 94
  • HSALNG0046968 169
  • HSALNG0046985 169
  • Lnc-FAM193B-7 170
  • Lnc-N4BP3-2 170
  • FAM153C 3

External Ids for FAM153CP Gene

Previous HGNC Symbols for FAM153CP Gene

  • FAM153C

Previous GeneCards Identifiers for FAM153CP Gene

  • GC05P178010
  • GC05P178011

Summaries for FAM153CP Gene

GeneCards Summary for FAM153CP Gene

FAM153CP (Family With Sequence Similarity 153 Member C, Pseudogene) is a Pseudogene.

Rfam classification for FAM153CP Gene

  • Metazoan signal recognition particle RNA

Additional gene information for FAM153CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for FAM153CP Gene

Genomics for FAM153CP Gene

GeneHancer (GH) Regulatory Elements for FAM153CP Gene

Promoters and enhancers for FAM153CP Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM153CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM153CP Gene

Genomic Locations for FAM153CP Gene
chr5:178,006,348-178,086,529
(GRCh38/hg38)
Size:
80,182 bases
Orientation:
Plus strand
chr5:177,433,406-177,482,560
(GRCh37/hg19)
Size:
49,155 bases
Orientation:
Plus strand

Genomic View for FAM153CP Gene

Genes around FAM153CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM153CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM153CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM153CP Gene

Proteins for FAM153CP Gene

Post-translational modifications for FAM153CP Gene

No Post-translational modifications

Other Protein References for FAM153CP Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM153CP Gene

Domains & Families for FAM153CP Gene

Gene Families for FAM153CP Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for FAM153CP Gene

GenScript: Design optimal peptide antigens:
  • Protein FAM153C (F153C_HUMAN)
genes like me logo Genes that share domains with FAM153CP: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM153CP Gene

Function for FAM153CP Gene

Phenotypes From GWAS Catalog for FAM153CP Gene

Phenotypes for FAM153CP Gene

genes like me logo Genes that share phenotypes with FAM153CP: view

Animal Model Products

CRISPR Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM153CP Gene

Localization for FAM153CP Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM153CP gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM153CP Gene

Pathways & Interactions for FAM153CP Gene

PathCards logo

SuperPathways for FAM153CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM153CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM153CP Gene

Drugs & Compounds for FAM153CP Gene

No Compound Related Data Available

Transcripts for FAM153CP Gene

mRNA/cDNA for FAM153CP Gene

(2) REFSEQ mRNAs :
(12) Additional mRNA sequences :
(51) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(37) RNACentral transcripts :
(7) LncBook transcripts :
(14) LNCipedia transcripts :
(6) NONCODE transcripts :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM153CP Gene

No ASD Table

Relevant External Links for FAM153CP Gene

GeneLoc Exon Structure for
FAM153CP
ECgene alternative splicing isoforms for
FAM153CP

Expression for FAM153CP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM153CP Gene:

FAM153CP

SOURCE GeneReport for Unigene cluster for FAM153CP Gene:

Hs.652193
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM153CP Gene

Orthologs for FAM153CP Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM153CP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 33
  • 97 (a)
ManyToMany
-- 33
  • 35 (a)
ManyToMany
Species where no ortholog for FAM153CP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM153CP Gene

ENSEMBL:
Gene Tree for FAM153CP (if available)
TreeFam:
Gene Tree for FAM153CP (if available)
Aminode:
Evolutionary constrained regions (ECRs) for FAM153CP: view image

Paralogs for FAM153CP Gene

No data available for Paralogs for FAM153CP Gene

Variants for FAM153CP Gene

Sequence variations from dbSNP and Humsavar for FAM153CP Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000040781 -- 178,024,758(+) T/G intron_variant
rs1000300940 -- 178,044,264(+) A/G intron_variant
rs1000481726 -- 178,016,005(+) A/G intron_variant
rs1000496265 -- 178,015,820(+) T/A/C intron_variant
rs1000641554 -- 178,026,679(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM153CP Gene

Variant ID Type Subtype PubMed ID
dgv5844n100 CNV gain 25217958
nsv1115711 CNV duplication 24896259
nsv1120062 OTHER inversion 24896259
nsv509105 CNV insertion 20534489
nsv950729 CNV deletion 24416366
nsv968283 CNV duplication 23825009
nsv968284 CNV duplication 23825009
nsv969026 CNV duplication 23825009
nsv969092 CNV duplication 23825009
nsv980768 CNV duplication 23825009

Variation tolerance for FAM153CP Gene

Gene Damage Index Score: 0.07; 1.61% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM153CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM153CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM153CP Gene

Disorders for FAM153CP Gene

No disorders were found for FAM153CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM153CP Gene

Publications for FAM153CP Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 56
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 56
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for FAM153CP Gene

Sources for FAM153CP Gene