Aliases for FAM13A-AS1 Gene

Subcategory (RNA class) for FAM13A-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM13A-AS1 Gene

  • FAM13A Antisense RNA 1 2 3 5
  • FAM13A Opposite Strand (Non-Protein Coding) 2 3
  • FAM13A Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00039 2 3
  • FAM13A-AS1 2 5
  • Family With Sequence Similarity 13, Member A1 Opposite Strand 3
  • FAM13A1 Opposite Strand (Non-Protein Coding) 3
  • Non-Protein Coding RNA 39 2
  • NONHSAG038409.2 91
  • HSALNG0035768 164
  • HSALNG0035769 164
  • Lnc-HERC3-14 165
  • FAM13A1OS 3
  • FAM13AOS 3

External Ids for FAM13A-AS1 Gene

Previous HGNC Symbols for FAM13A-AS1 Gene

  • FAM13A1OS
  • FAM13AOS

Previous GeneCards Identifiers for FAM13A-AS1 Gene

  • GC04P089631

Summaries for FAM13A-AS1 Gene

GeneCards Summary for FAM13A-AS1 Gene

FAM13A-AS1 (FAM13A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for FAM13A-AS1 Gene

  • FAM13A antisense RNA 1 conserved region 1
  • FAM13A antisense RNA 1 conserved region 2

Additional gene information for FAM13A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for FAM13A-AS1 Gene

Genomics for FAM13A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM13A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J088721 Promoter/Enhancer 0.5 EPDnew dbSUPER 600.4 +12.4 12427 0.1 ENSG00000276003 FAM13A-AS1 NAP1L5 ENSG00000278151 TIGD2
GH04J088757 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 16.9 +49.1 49145 3.3 IKZF1 JUND POLR2A DPF2 CEBPA TCF12 EP300 CEBPB FOXK2 FOXA2 lnc-NAP1L5-3 FAM13A-AS1 NAP1L5 HERC3 lnc-NAP1L5-2 FAM13A TIGD2
GH04J088752 Enhancer 1.1 Ensembl ENCODE dbSUPER 16.2 +44.8 44791 3.3 GATAD2A REST RCOR2 RXRB SP1 PBX2 CEBPA FOXK2 SOX13 TCF7 FAM13A-AS1 NAP1L5 lnc-NAP1L5-3 lnc-NAP1L5-2 FAM13A TIGD2
GH04J088997 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +290.7 290717 5.5 ZNF629 IKZF1 JUND PRDM1 REST ZNF740 DPF2 HDAC1 ELK1 SOX6 FAM13A TIGD2 FAM13A-AS1 NAP1L5 SNCA HSALNG0035775 lnc-NAP1L5-4
GH04J088743 Enhancer 0.7 Ensembl ENCODE dbSUPER 19.3 +34.5 34503 1.6 FOS JUND HNF4A FAM13A-AS1 NAP1L5 lnc-NAP1L5-2 lnc-NAP1L5-3 FAM13A TIGD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM13A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAM13A-AS1 Gene

Genomic Locations for FAM13A-AS1 Gene
chr4:88,709,298-88,730,103
(GRCh38/hg38)
Size:
20,806 bases
Orientation:
Plus strand
chr4:89,630,940-89,651,254
(GRCh37/hg19)
Size:
20,315 bases
Orientation:
Plus strand

Genomic View for FAM13A-AS1 Gene

Genes around FAM13A-AS1 on UCSC Golden Path with GeneCards custom track
FAM13A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM13A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM13A-AS1 Gene

Proteins for FAM13A-AS1 Gene

Post-translational modifications for FAM13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM13A-AS1 Gene

Domains & Families for FAM13A-AS1 Gene

Gene Families for FAM13A-AS1 Gene

genes like me logo Genes that share domains with FAM13A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM13A-AS1 Gene

Function for FAM13A-AS1 Gene

Phenotypes From GWAS Catalog for FAM13A-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM13A-AS1 Gene

Localization for FAM13A-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM13A-AS1 gene
Compartment Confidence
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM13A-AS1 Gene

Pathways & Interactions for FAM13A-AS1 Gene

PathCards logo

SuperPathways for FAM13A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM13A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM13A-AS1 Gene

Drugs & Compounds for FAM13A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM13A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM13A-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024BB67_9606 lncRNA 3210 4

HGNC: 19370,

RefSeq: NR_002806,

Ensembl: ENST00000500765 (view in UCSC) ,

NONCODE: NONHSAT097373.2,

URS0000EF4DC7_9606 lncRNA 7056 1

Ensembl: ENST00000659507 (view in UCSC) ,

URS0000EEE934_9606 lncRNA 4416 1

Ensembl: ENST00000668537 (view in UCSC) ,

URS0000EEF1FC_9606 lncRNA 3665 1

Ensembl: ENST00000652855 (view in UCSC) ,

URS000059BB73_9606 lncRNA 2453 1

Ensembl: ENST00000511543 (view in UCSC) ,

FAM13A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM13A-AS1 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM13A-AS1 Gene

No ASD Table

Relevant External Links for FAM13A-AS1 Gene

GeneLoc Exon Structure for
FAM13A-AS1

Expression for FAM13A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM13A-AS1 Gene

This gene is overexpressed in Whole Blood (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM13A-AS1

SOURCE GeneReport for Unigene cluster for FAM13A-AS1 Gene:

Hs.744957
genes like me logo Genes that share expression patterns with FAM13A-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM13A-AS1 Gene

Orthologs for FAM13A-AS1 Gene

Evolution for FAM13A-AS1 Gene

ENSEMBL:
Gene Tree for FAM13A-AS1 (if available)
TreeFam:
Gene Tree for FAM13A-AS1 (if available)

No data available for Orthologs for FAM13A-AS1 Gene

Paralogs for FAM13A-AS1 Gene

No data available for Paralogs for FAM13A-AS1 Gene

Variants for FAM13A-AS1 Gene

Additional dbSNP identifiers (rs#s) for FAM13A-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM13A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv461576 CNV gain 19166990
nsv470051 CNV gain 18288195
nsv594806 CNV gain 21841781

Additional Variant Information for FAM13A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM13A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM13A-AS1 Gene

Disorders for FAM13A-AS1 Gene

No disorders were found for FAM13A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM13A-AS1 Gene

Publications for FAM13A-AS1 Gene

  1. Cloning and characterization of FAM13A1--a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins. (PMID: 15234000) Cohen M … Seroussi E (Genomics 2004) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for FAM13A-AS1 Gene

Sources for FAM13A-AS1 Gene