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Aliases for FAM13A-AS1 Gene

Subcategory (RNA class) for FAM13A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM13A-AS1 Gene

  • FAM13A Antisense RNA 1 2 3 5
  • FAM13A Opposite Strand (Non-Protein Coding) 2 3
  • FAM13A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Family With Sequence Similarity 13, Member A1 Opposite Strand 3
  • FAM13A1 Opposite Strand (Non-Protein Coding) 3
  • Non-Protein Coding RNA 39 2
  • NCRNA00039 3
  • FAM13A1OS 3
  • FAM13AOS 3

External Ids for FAM13A-AS1 Gene

Previous HGNC Symbols for FAM13A-AS1 Gene

  • FAM13A1OS
  • FAM13AOS

Previous GeneCards Identifiers for FAM13A-AS1 Gene

  • GC04P089631

Summaries for FAM13A-AS1 Gene

GeneCards Summary for FAM13A-AS1 Gene

FAM13A-AS1 (FAM13A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM13A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM13A-AS1 Gene

Genomics for FAM13A-AS1 Gene

GeneHancer (GH) Regulatory Elements for FAM13A-AS1 Gene

Promoters and enhancers for FAM13A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I088757 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.6 +48.9 48873 2.8 ELF3 FOXA2 ARNT FEZF1 RAD21 TCF12 MIXL1 CEBPB ZEB2 NFIC FAM13A-AS1 HERC3 PIR43353 LOC105377327 FAM13A
GH04I088997 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +290.2 290226 5.5 PKNOX1 ATF1 FOXA2 FEZF1 ELK1 ATF7 REST TSHZ1 ZNF592 MEF2D FAM13A FAM13A-AS1 TIGD2 NAP1L5 SNCA GC04M088970 GC04P089101
GH04I088752 Enhancer 1 ENCODE dbSUPER 16.2 +44.3 44300 3.3 ELF3 FOXA2 MLX ARID4B DMAP1 RAD21 RARA YY1 CREM MIXL1 FAM13A-AS1 NAP1L5 PIR43353 LOC105377327 FAM13A
GH04I088791 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +82.9 82886 2.4 CTCF NR2F1 HLF BACH1 DPF2 BATF RAD21 ZNF217 BCL11A IKZF1 FAM13A-AS1 NAP1L5 FAM13A HERC6 HERC5 PIR43353 LOC105377327
GH04I088743 Enhancer 0.6 ENCODE dbSUPER 19.3 +34.1 34101 1.3 JUND FOS HNF4A FAM13A-AS1 NAP1L5 PIR43353 LOC105377327 FAM13A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM13A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM13A-AS1 Gene

Genomic Locations for FAM13A-AS1 Gene
chr4:88,709,789-88,730,103
(GRCh38/hg38)
Size:
20,315 bases
Orientation:
Plus strand
chr4:89,630,940-89,651,254
(GRCh37/hg19)

Genomic View for FAM13A-AS1 Gene

Genes around FAM13A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM13A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM13A-AS1 Gene

Proteins for FAM13A-AS1 Gene

Post-translational modifications for FAM13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM13A-AS1 Gene

Domains & Families for FAM13A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM13A-AS1 Gene

Function for FAM13A-AS1 Gene

Phenotypes From GWAS Catalog for FAM13A-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM13A-AS1 Gene

Localization for FAM13A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM13A-AS1 Gene

Pathways & Interactions for FAM13A-AS1 Gene

SuperPathways for FAM13A-AS1 Gene

No Data Available

Interacting Proteins for FAM13A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM13A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM13A-AS1 Gene

Drugs & Compounds for FAM13A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM13A-AS1 Gene

mRNA/cDNA for FAM13A-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM13A-AS1 Gene

FAM13A antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM13A-AS1 Gene

No ASD Table

Relevant External Links for FAM13A-AS1 Gene

GeneLoc Exon Structure for
FAM13A-AS1
ECgene alternative splicing isoforms for
FAM13A-AS1

Expression for FAM13A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM13A-AS1 Gene

This gene is overexpressed in Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for FAM13A-AS1 Gene:

Hs.744957
genes like me logo Genes that share expression patterns with FAM13A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM13A-AS1 Gene

Orthologs for FAM13A-AS1 Gene

Evolution for FAM13A-AS1 Gene

ENSEMBL:
Gene Tree for FAM13A-AS1 (if available)
TreeFam:
Gene Tree for FAM13A-AS1 (if available)

No data available for Orthologs for FAM13A-AS1 Gene

Paralogs for FAM13A-AS1 Gene

No data available for Paralogs for FAM13A-AS1 Gene

Variants for FAM13A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM13A-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000083741 -- 88,714,486(+) T/A intron_variant
rs1000147170 -- 88,715,576(+) G/T intron_variant
rs1000369605 -- 88,720,355(+) G/T intron_variant
rs1000444652 -- 88,714,254(+) C/T intron_variant
rs1000479840 -- 88,726,985(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM13A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv594806 CNV gain 21841781
nsv470051 CNV gain 18288195
nsv461576 CNV gain 19166990

Additional Variant Information for FAM13A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM13A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM13A-AS1 Gene

Disorders for FAM13A-AS1 Gene

Additional Disease Information for FAM13A-AS1

No disorders were found for FAM13A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM13A-AS1 Gene

Publications for FAM13A-AS1 Gene

  1. Cloning and characterization of FAM13A1--a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins. (PMID: 15234000) Cohen M … Seroussi E (Genomics 2004) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FAM13A-AS1 Gene

Sources for FAM13A-AS1 Gene

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