Aliases for FAM138D Gene

Subcategory (RNA class) for FAM138D Gene


Number of RNA Genes sources:

3 / 14

Aliases for FAM138D Gene

  • Family With Sequence Similarity 138 Member D 2 3 5
  • FAM138D 2 168
  • Family With Sequence Similarity 138, Member D 2
  • F379 Retina-Specific Protein 3
  • HSALNG0088434 167
  • NONHSAG010118 92
  • F379 3

External Ids for FAM138D Gene

Previous GeneCards Identifiers for FAM138D Gene

  • GC12U900769
  • GC12M000019
  • GC12M000147

Summaries for FAM138D Gene

GeneCards Summary for FAM138D Gene

FAM138D (Family With Sequence Similarity 138 Member D) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM138D Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM138D Gene

Genomics for FAM138D Gene

GeneHancer (GH) Regulatory Elements for FAM138D Gene

Promoters and enhancers for FAM138D Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000039 Enhancer 0.4 Ensembl 0.7 -2.1 -2066 2 ZNF316 ZNF592 POLR2A piR-32677-093 piR-45504-095 piR-50308-097 piR-53562-075 piR-54592-061 piR-48300-023 piR-55654-082 FAM138D
GH12J000034 Promoter 0.3 Ensembl 0.7 +3.3 3333 2.8 piR-35049-003 FAM138D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM138D on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM138D gene promoter:
  • Brachyury
  • E4BP4
  • NF-kappaB
  • NF-kappaB1
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c
  • SREBP-1b
  • SREBP-1c

Genomic Locations for FAM138D Gene

Genomic Locations for FAM138D Gene
1,533 bases
Minus strand
2,340 bases
Minus strand

Genomic View for FAM138D Gene

Genes around FAM138D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM138D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138D Gene

Proteins for FAM138D Gene

Post-translational modifications for FAM138D Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138D Gene

Domains & Families for FAM138D Gene

Suggested Antigen Peptide Sequences for FAM138D Gene

GenScript: Design optimal peptide antigens:
  • Protein FAM138D (F138D_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM138D Gene

Function for FAM138D Gene

Phenotypes From GWAS Catalog for FAM138D Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138D Gene

Localization for FAM138D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM138D Gene

Pathways & Interactions for FAM138D Gene

PathCards logo

SuperPathways for FAM138D Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM138D Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM138D Gene

Drugs & Compounds for FAM138D Gene

No Compound Related Data Available

Transcripts for FAM138D Gene

mRNA/cDNA for FAM138D Gene

5 RNACentral transcripts :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
5 LncBook transcripts :
4 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138D Gene

No ASD Table

Relevant External Links for FAM138D Gene

GeneLoc Exon Structure for

Expression for FAM138D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM138D Gene

Protein differential expression in normal tissues from HIPED for FAM138D Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for FAM138D Gene

Protein tissue co-expression partners for FAM138D Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM138D

SOURCE GeneReport for Unigene cluster for FAM138D Gene:

genes like me logo Genes that share expression patterns with FAM138D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM138D Gene

Orthologs for FAM138D Gene

Evolution for FAM138D Gene

Gene Tree for FAM138D (if available)
Gene Tree for FAM138D (if available)

No data available for Orthologs for FAM138D Gene

Paralogs for FAM138D Gene

No data available for Paralogs for FAM138D Gene

Variants for FAM138D Gene

Additional dbSNP identifiers (rs#s) for FAM138D Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM138D Gene

Variant ID Type Subtype PubMed ID
nsv1078332 CNV duplication 25765185
nsv1110202 CNV duplication 24896259
nsv1115424 CNV duplication 24896259
nsv1145916 CNV duplication 26484159
nsv482937 CNV loss 15286789

Additional Variant Information for FAM138D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM138D Gene

Disorders for FAM138D Gene

Additional Disease Information for FAM138D

No disorders were found for FAM138D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138D Gene

Publications for FAM138D Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 2 3 54
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N … Weber BH (Biochimica et biophysica acta 2001) 2 3 54

Products for FAM138D Gene

Sources for FAM138D Gene