Aliases for FAM138A Gene

Subcategory (RNA class) for FAM138A Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for FAM138A Gene

  • Family With Sequence Similarity 138 Member A 2 3 5
  • FAM138F 2 3 165
  • FAM138A 2 5 165
  • F379 2 3
  • Family With Sequence Similarity 138, Member A 2
  • Chromosome 1 F379 Retina Specific Protein 3
  • F379 Retina-Specific Protein 3
  • NONHSAG000004.2 91
  • NONHSAG024270.2 91
  • HSALNG0122829 164
  • HSALNG0000006 164

External Ids for FAM138A Gene

Previous GeneCards Identifiers for FAM138A Gene

  • GC01U901628
  • GC01M000026

Summaries for FAM138A Gene

GeneCards Summary for FAM138A Gene

FAM138A (Family With Sequence Similarity 138 Member A) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for FAM138A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM138A Gene

Genomics for FAM138A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAM138A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J000036 Enhancer 0.2 Ensembl 600.7 -1.2 -1175 6.3 FAM138A lnc-OR4F29-10 OR4F5
GH01J000033 Enhancer 0.2 Ensembl 0.7 +2.2 2180 0.2 piR-35049-001 FAM138A OR4F5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAM138A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the FAM138A gene promoter:
  • CUTL1
  • E4BP4
  • FOXL1
  • Pax-4a
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c
  • Sox5
  • Sox9

Genomic Locations for FAM138A Gene

Genomic Locations for FAM138A Gene
chr1:34,554-36,081
(GRCh38/hg38)
Size:
1,528 bases
Orientation:
Minus strand
chr1:34,554-36,081
(GRCh37/hg19)
Size:
1,528 bases
Orientation:
Minus strand

Genomic View for FAM138A Gene

Genes around FAM138A on UCSC Golden Path with GeneCards custom track
FAM138A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
FAM138A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138A Gene

Proteins for FAM138A Gene

Post-translational modifications for FAM138A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138A Gene

Domains & Families for FAM138A Gene

Gene Families for FAM138A Gene

genes like me logo Genes that share domains with FAM138A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM138A Gene

Function for FAM138A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138A Gene

Localization for FAM138A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM138A Gene

Pathways & Interactions for FAM138A Gene

PathCards logo

SuperPathways for FAM138A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM138A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAM138A Gene

Drugs & Compounds for FAM138A Gene

No Compound Related Data Available

Transcripts for FAM138A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM138A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002D7B9C_9606 lncRNA 1187 4

Ensembl: ENST00000417324 (view in UCSC) ,

LncBook: HSALNT0253922,

LNCipedia: FAM138A:1, FAM138F:2,

NONCODE: NONHSAT000013.2, NONHSAT060102.2,

URS0000311D9A_9606 lncRNA 1130 4

HGNC: 32334, 33581,

RefSeq: NR_026818, NR_026820,

LncBook: HSALNT0000012, HSALNT0253925,

LNCipedia: FAM138A:2, FAM138F:3,

URS0000162D42_9606 lncRNA 590 4

Ensembl: ENST00000461467 (view in UCSC) ,

LncBook: HSALNT0000013,

LNCipedia: FAM138A:3,

NONCODE: NONHSAT000014.2,

FAM138A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for FAM138A Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138A Gene

No ASD Table

Relevant External Links for FAM138A Gene

GeneLoc Exon Structure for
FAM138A

Expression for FAM138A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM138A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM138A

SOURCE GeneReport for Unigene cluster for FAM138A Gene:

Hs.569137
genes like me logo Genes that share expression patterns with FAM138A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM138A Gene

Orthologs for FAM138A Gene

Evolution for FAM138A Gene

ENSEMBL:
Gene Tree for FAM138A (if available)
TreeFam:
Gene Tree for FAM138A (if available)

No data available for Orthologs for FAM138A Gene

Paralogs for FAM138A Gene

No data available for Paralogs for FAM138A Gene

Variants for FAM138A Gene

Additional dbSNP identifiers (rs#s) for FAM138A Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM138A Gene

Variant ID Type Subtype PubMed ID
dgv1664n106 CNV duplication 24896259
dgv1956e59 CNV duplication 20981092
dgv1957e59 CNV duplication 20981092
dgv1e59 CNV duplication 20981092
dgv3939n106 CNV duplication 24896259
dgv4273e59 CNV duplication 20981092
esv22059 CNV gain+loss 19812545
esv23366 CNV gain+loss 19812545
esv27265 CNV gain+loss 19812545
esv2759654 CNV gain+loss 17122850
esv3433926 CNV duplication 20981092
esv994482 CNV gain 20482838
nsv1076307 CNV duplication 25765185
nsv1076458 CNV duplication 25765185
nsv1078624 CNV duplication 25765185
nsv1110123 CNV duplication 24896259
nsv1139462 CNV duplication 24896259
nsv1147468 CNV duplication 26484159
nsv1148144 CNV duplication 26484159
nsv428112 CNV gain 18775914
nsv469759 CNV gain 16826518
nsv471520 CNV gain 19718026
nsv471591 CNV loss 15918152
nsv482937 CNV loss 15286789
nsv7879 CNV gain+loss 18304495
nsv820962 CNV duplication 20802225
nsv8400 CNV gain+loss 18304495
nsv945486 CNV duplication 23825009
nsv945487 CNV duplication 23825009
nsv945699 CNV duplication 23825009
nsv960766 CNV duplication 23825009
nsv961258 CNV duplication 23825009
nsv961259 CNV duplication 23825009
nsv9651 CNV gain+loss 18304495
nsv968757 CNV duplication 23825009

Additional Variant Information for FAM138A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM138A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM138A Gene

Disorders for FAM138A Gene

Additional Disease Information for FAM138A

No disorders were found for FAM138A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138A Gene

Publications for FAM138A Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 2 3
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N … Weber BH (Biochimica et biophysica acta 2001) 2 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3
  5. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3

Products for FAM138A Gene

Sources for FAM138A Gene