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Aliases for FAM138A Gene
Subcategory (RNA class) for FAM138A Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for FAM138A Gene
External Ids for FAM138A Gene
- HGNC: 32334
- Entrez Gene: 645520
- Ensembl: ENSG00000237613
Previous GeneCards Identifiers for FAM138A Gene
- GC01U901628
- GC01M000026
Summaries for FAM138A Gene
GeneCards Summary for FAM138A Gene
FAM138A (Family With Sequence Similarity 138 Member A) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for FAM138A Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAM138A Gene
Genomics for FAM138A Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for FAM138A Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J000036 | Enhancer | 0.2 | Ensembl | 600.7 | -1.2 | -1175 | 6.3 | FAM138A lnc-OR4F29-10 OR4F5 | ||
| GH01J000033 | Enhancer | 0.2 | Ensembl | 0.7 | +2.2 | 2180 | 0.2 | piR-35049-001 FAM138A OR4F5 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around FAM138A on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the FAM138A gene promoter:
-
- CUTL1
- E4BP4
- FOXL1
- Pax-4a
- POU2F1
- POU2F1a
- POU2F1b
- POU2F1c
- Sox5
- Sox9
Genomic Locations for FAM138A Gene
Genomic Locations for FAM138A Gene
- chr1:34,554-36,081
- (GRCh38/hg38)
- Size:
- 1,528 bases
- Orientation:
- Minus strand
- chr1:34,554-36,081
- (GRCh37/hg19)
- Size:
- 1,528 bases
- Orientation:
- Minus strand
Genomic View for FAM138A Gene
Genes around FAM138A on UCSC Golden Path with GeneCards custom track
FAM138A in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p36.33 by HGNC
- 1p36.33 by Entrez Gene
- 1p36.33 by Ensembl
FAM138A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM138A Gene
Proteins for FAM138A Gene
Post-translational modifications for FAM138A Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM138A
- Origene Custom Protein Services for FAM138A
No data available for DME Specific Peptides for FAM138A Gene
Domains & Families for FAM138A Gene
Gene Families for FAM138A Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAM138A Gene
Function for FAM138A Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for FAM138A - Select products 50% OFF >
- * FAM138A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for FAM138A
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for FAM138A - Select products 50% OFF >
- * FAM138A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138A Gene
Localization for FAM138A Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM138A Gene
Transcripts for FAM138A Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for FAM138A Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00002D7B9C_9606 | lncRNA | 1187 | 4 |
Ensembl: ENST00000417324 (view in UCSC) , LncBook: HSALNT0253922, LNCipedia: FAM138A:1, FAM138F:2, NONCODE: NONHSAT000013.2, NONHSAT060102.2, |
| URS0000311D9A_9606 | lncRNA | 1130 | 4 |
LncBook: HSALNT0000012, HSALNT0253925, |
| URS0000162D42_9606 | lncRNA | 590 | 4 |
Ensembl: ENST00000461467 (view in UCSC) , LncBook: HSALNT0000013, LNCipedia: FAM138A:3, NONCODE: NONHSAT000014.2, |
FAM138A in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for FAM138A Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for FAM138A - Select products 50% OFF >
- * FAM138A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for FAM138A
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for FAM138A - Select products 50% OFF >
- * FAM138A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for FAM138A Gene
- GeneLoc Exon Structure for
- FAM138A
Expression for FAM138A Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAM138A
SOURCE GeneReport for Unigene cluster for FAM138A Gene:
Hs.569137Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM138A Gene
Orthologs for FAM138A Gene
No data available for Orthologs for FAM138A Gene
Paralogs for FAM138A Gene
No data available for Paralogs for FAM138A Gene
Variants for FAM138A Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1664n106 | CNV | duplication | 24896259 |
| dgv1956e59 | CNV | duplication | 20981092 |
| dgv1957e59 | CNV | duplication | 20981092 |
| dgv1e59 | CNV | duplication | 20981092 |
| dgv3939n106 | CNV | duplication | 24896259 |
| dgv4273e59 | CNV | duplication | 20981092 |
| esv22059 | CNV | gain+loss | 19812545 |
| esv23366 | CNV | gain+loss | 19812545 |
| esv27265 | CNV | gain+loss | 19812545 |
| esv2759654 | CNV | gain+loss | 17122850 |
| esv3433926 | CNV | duplication | 20981092 |
| esv994482 | CNV | gain | 20482838 |
| nsv1076307 | CNV | duplication | 25765185 |
| nsv1076458 | CNV | duplication | 25765185 |
| nsv1078624 | CNV | duplication | 25765185 |
| nsv1110123 | CNV | duplication | 24896259 |
| nsv1139462 | CNV | duplication | 24896259 |
| nsv1147468 | CNV | duplication | 26484159 |
| nsv1148144 | CNV | duplication | 26484159 |
| nsv428112 | CNV | gain | 18775914 |
| nsv469759 | CNV | gain | 16826518 |
| nsv471520 | CNV | gain | 19718026 |
| nsv471591 | CNV | loss | 15918152 |
| nsv482937 | CNV | loss | 15286789 |
| nsv7879 | CNV | gain+loss | 18304495 |
| nsv820962 | CNV | duplication | 20802225 |
| nsv8400 | CNV | gain+loss | 18304495 |
| nsv945486 | CNV | duplication | 23825009 |
| nsv945487 | CNV | duplication | 23825009 |
| nsv945699 | CNV | duplication | 23825009 |
| nsv960766 | CNV | duplication | 23825009 |
| nsv961258 | CNV | duplication | 23825009 |
| nsv961259 | CNV | duplication | 23825009 |
| nsv9651 | CNV | gain+loss | 18304495 |
| nsv968757 | CNV | duplication | 23825009 |
Additional Variant Information for FAM138A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FAM138A
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for FAM138A Gene
Disorders for FAM138A Gene
Additional Disease Information for FAM138A
No disorders were found for FAM138A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138A Gene
Publications for FAM138A Gene
- Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 2 3
- Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N … Weber BH (Biochimica et biophysica acta 2001) 2 3
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3
- DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3
ExternalLinks
Products for FAM138A Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAM138A
- Origene Custom Protein Services for FAM138A
- Browse OriGene Inhibitory RNA Products For FAM138A
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for FAM138A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For FAM138A
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for FAM138A
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- Search GeneCopoeia for miRNA 3'UTR Target clone products for FAM138A
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for FAM138A
Sources for FAM138A Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB