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FAHD2CP Gene(Pseudogene)

Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene

GCID:
GC02P096010
GIFtS:
14
Genes Participants
UDN Logo

Aliases for FAHD2CP Gene

Aliases for FAHD2CP Gene

  • Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene 2 3 5

External Ids for FAHD2CP Gene

Previous GeneCards Identifiers for FAHD2CP Gene

  • GC02P096677

Summaries for FAHD2CP Gene

GeneCards Summary for FAHD2CP Gene

FAHD2CP (Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene) is a Pseudogene.

Additional gene information for FAHD2CP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAHD2CP Gene

Genomics for FAHD2CP Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for FAHD2CP Gene

Promoters and enhancers for FAHD2CP Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02I096009 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 -0.1 -57 1.8 HDAC1 PKNOX1 ATF1 RB1 SIN3A RFX5 ZNF335 POLR2B GLIS2 ZNF207 FAHD2CP ADRA2B ASTL DUSP2 RN7SL210P
GH02I096116 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 16 +106.3 106275 0.9 RB1 SIN3A KLF5 RAD21 ZNF335 GLIS2 ZNF207 ZNF143 EGR2 SMARCA5 ADRA2B FAHD2CP ASTL
GH02I096190 Enhancer 0.3 dbSUPER 19.4 +181.7 181731 4.5 IKZF1 ADRA2B FAHD2CP ASTL DUSP2 ENSG00000230747 ITPRIPL1 CIAO1 GC02P096183 STARD7 STARD7-AS1
GH02I096091 Enhancer 0.3 ENCODE 4.8 +80.7 80677 0.2 HNF4A ADRA2B ASTL FAHD2CP GC02P096109 LOC105373494
GH02I096023 Enhancer 0.6 Ensembl 0.4 +12.6 12550 0.2 SMARCA5 CTCF ZNF654 REST ELF1 RAD21 ZNF217 ZNF366 ARID2 ZNF143 GC02P096014 FAHD2CP LOC105373493 GPAT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAHD2CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAHD2CP Gene

Genomic Locations for FAHD2CP Gene
chr2:96,010,551-96,023,380
(GRCh38/hg38)
Size:
12,830 bases
Orientation:
Plus strand
chr2:96,676,299-96,689,128
(GRCh37/hg19)

Genomic View for FAHD2CP Gene

Genes around FAHD2CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAHD2CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAHD2CP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAHD2CP Gene

Proteins for FAHD2CP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAHD2CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAHD2CP Gene

Domains & Families for FAHD2CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAHD2CP Gene

Function for FAHD2CP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for FAHD2CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAHD2CP Gene

Localization for FAHD2CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAHD2CP Gene

Pathways & Interactions for FAHD2CP Gene

SuperPathways for FAHD2CP Gene

PathCards logo More details on SuperPathways for FAHD2CP
No Data Available

Interacting Proteins for FAHD2CP Gene

Gene Ontology (GO) - Biological Process for FAHD2CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAHD2CP Gene

Drugs & Compounds for FAHD2CP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAHD2CP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for FAHD2CP Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAHD2CP Gene

Fumarylacetoacetate hydrolase domain containing 2C, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAHD2CP Gene

No ASD Table

Relevant External Links for FAHD2CP Gene

GeneLoc Exon Structure for
FAHD2CP
ECgene alternative splicing isoforms for
FAHD2CP

Expression for FAHD2CP Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAHD2CP Gene

mRNA expression in normal human tissues for FAHD2CP Gene
mRNA expression by BioGPS for FAHD2CP GenemRNA expression by GTEx for FAHD2CP Gene

mRNA differential expression in normal tissues according to GTEx for FAHD2CP Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of FAHD2CP Gene:

FAHD2CP

SOURCE GeneReport for Unigene cluster for FAHD2CP Gene:

Hs.720108
genes like me logo Genes that share expression patterns with FAHD2CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAHD2CP Gene

Orthologs for FAHD2CP Gene

Evolution for FAHD2CP Gene

ENSEMBL:
Gene Tree for FAHD2CP (if available)
TreeFam:
Gene Tree for FAHD2CP (if available)

No data available for Orthologs for FAHD2CP Gene

Paralogs for FAHD2CP Gene

No data available for Paralogs for FAHD2CP Gene

Variants for FAHD2CP Gene

Sequence variations from dbSNP and Humsavar for FAHD2CP Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000127484 -- 96,012,663(+) T/G intron_variant
rs1000278887 -- 96,009,752(+) T/ upstream_transcript_variant
rs1000448636 -- 96,016,673(+) C/A intron_variant
rs1000563261 -- 96,016,366(+) A/C intron_variant
rs1000789253 -- 96,009,523(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAHD2CP Gene

Variant ID Type Subtype PubMed ID
nsv961454 CNV duplication 23825009
nsv818073 CNV gain 17921354
nsv7322 OTHER inversion 18451855
nsv516044 CNV gain+loss 19592680
nsv499420 OTHER inversion 21111241
nsv1135873 CNV deletion 24896259
nsv1004486 CNV gain 25217958
nsv1003371 CNV gain 25217958
esv993391 CNV gain 20482838
esv5003 OTHER complex 18987735
esv3591652 OTHER inversion 21293372
esv3575268 CNV gain 25503493
esv3425717 CNV duplication 20981092
dgv607e201 CNV deletion 23290073

Additional Variant Information for FAHD2CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAHD2CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAHD2CP Gene

Disorders for FAHD2CP Gene

Additional Disease Information for FAHD2CP

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for FAHD2CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAHD2CP Gene

Publications for FAHD2CP Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for FAHD2CP Gene

Sources for FAHD2CP Gene

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