Aliases for FAHD2CP Gene

Aliases for FAHD2CP Gene

  • Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene 2 3 5
  • Fumarylacetoacetate Hydrolase Domain Containing 2A Pseudogene 3
  • Fumarylacetoacetate Hydrolase Domain Containing 2 Pseudogene 3
  • FAHD2CP 5

External Ids for FAHD2CP Gene

Previous GeneCards Identifiers for FAHD2CP Gene

  • GC02P096677

Summaries for FAHD2CP Gene

GeneCards Summary for FAHD2CP Gene

FAHD2CP (Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene) is a Pseudogene.

Additional gene information for FAHD2CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for FAHD2CP Gene

Genomics for FAHD2CP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for FAHD2CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J096009 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 600.7 0.0 -24 2.1 CREB1 CTCF ATF7 ZNF629 ZNF692 BACH1 PKNOX1 MTA1 PATZ1 ZNF501 FAHD2CP lnc-CIAO1-4 GPAT2 ADRA2B DUSP2 ASTL ENSG00000230747 ITPRIPL1 lnc-ANKRD36C-3 ANKRD36C
GH02J096116 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas 16 +106.1 106050 3.2 CTCF HNRNPL BACH1 LARP7 ZNF143 REST RAD21 TRIM22 ZFX NONO ADRA2B GPAT2 FAHD2CP ASTL
GH02J096879 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +874.2 874226 9.6 CREB1 ZBTB33 PRDM10 TARDBP ZHX2 PKNOX1 GTF2F1 ZNF341 RBAK NONO SNRNP200 KANSL3 ANKRD36 CNNM3 ANKRD36B LMAN2L CIAO1 ENSG00000277701 C2orf92 ARID5A
GH02J096091 Enhancer 0.8 Ensembl ENCODE 17.9 +81.2 81150 4.6 ZIC2 ZNF341 SCRT2 KLF9 CTCF ZNF316 KLF4 NFIC PRDM4 KLF17 piR-56792 FAHD2CP GPAT2 SNRNP200 ADRA2B ASTL DUSP2
GH02J096190 Enhancer 0.3 dbSUPER 19.4 +181.7 181731 4.5 RBM22 IKZF1 ADRA2B FAHD2CP ASTL DUSP2 ENSG00000230747 ITPRIPL1 CIAO1 lnc-DUSP2-2 lnc-STARD7-1 STARD7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FAHD2CP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for FAHD2CP Gene

Genomic Locations for FAHD2CP Gene
chr2:96,010,551-96,023,380
(GRCh38/hg38)
Size:
12,830 bases
Orientation:
Plus strand
chr2:96,676,299-96,689,128
(GRCh37/hg19)
Size:
12,830 bases
Orientation:
Plus strand

Genomic View for FAHD2CP Gene

Genes around FAHD2CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAHD2CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAHD2CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAHD2CP Gene

Proteins for FAHD2CP Gene

Post-translational modifications for FAHD2CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAHD2CP Gene

Domains & Families for FAHD2CP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for FAHD2CP Gene

Function for FAHD2CP Gene

Phenotypes From GWAS Catalog for FAHD2CP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAHD2CP Gene

Localization for FAHD2CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAHD2CP Gene

Pathways & Interactions for FAHD2CP Gene

PathCards logo

SuperPathways for FAHD2CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAHD2CP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for FAHD2CP Gene

Drugs & Compounds for FAHD2CP Gene

No Compound Related Data Available

Transcripts for FAHD2CP Gene

mRNA/cDNA for FAHD2CP Gene

4 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAHD2CP Gene

No ASD Table

Relevant External Links for FAHD2CP Gene

GeneLoc Exon Structure for
FAHD2CP

Expression for FAHD2CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAHD2CP Gene

mRNA differential expression in normal tissues according to GTEx for FAHD2CP Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for FAHD2CP

SOURCE GeneReport for Unigene cluster for FAHD2CP Gene:

Hs.720108
genes like me logo Genes that share expression patterns with FAHD2CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAHD2CP Gene

Orthologs for FAHD2CP Gene

Evolution for FAHD2CP Gene

ENSEMBL:
Gene Tree for FAHD2CP (if available)
TreeFam:
Gene Tree for FAHD2CP (if available)

No data available for Orthologs for FAHD2CP Gene

Paralogs for FAHD2CP Gene

No data available for Paralogs for FAHD2CP Gene

Variants for FAHD2CP Gene

Structural Variations from Database of Genomic Variants (DGV) for FAHD2CP Gene

Variant ID Type Subtype PubMed ID
dgv607e201 CNV deletion 23290073
esv3425717 CNV duplication 20981092
esv3575268 CNV gain 25503493
esv3591652 OTHER inversion 21293372
esv5003 OTHER complex 18987735
esv993391 CNV gain 20482838
nsv1003371 CNV gain 25217958
nsv1004486 CNV gain 25217958
nsv1135873 CNV deletion 24896259
nsv499420 OTHER inversion 21111241
nsv516044 CNV gain+loss 19592680
nsv7322 OTHER inversion 18451855
nsv818073 CNV gain 17921354
nsv961454 CNV duplication 23825009

Additional Variant Information for FAHD2CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAHD2CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for FAHD2CP Gene

Disorders for FAHD2CP Gene

Additional Disease Information for FAHD2CP

No disorders were found for FAHD2CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAHD2CP Gene

Publications for FAHD2CP Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for FAHD2CP Gene

Sources for FAHD2CP Gene