Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FABP1 Gene

Aliases for FABP1 Gene

  • Fatty Acid Binding Protein 1 2 3 5
  • Liver-Type Fatty Acid-Binding Protein 3 4
  • Fatty Acid Binding Protein 1, Liver 2 3
  • L-FABP 3 4
  • FABPL 3 4
  • Fatty Acid-Binding Protein, Liver 3
  • Fatty Acid-Binding Protein 1 4

External Ids for FABP1 Gene

Previous GeneCards Identifiers for FABP1 Gene

  • GC02M087977
  • GC02M088715
  • GC02M088307
  • GC02M088324
  • GC02M088261
  • GC02M088422
  • GC02M087344

Summaries for FABP1 Gene

Entrez Gene Summary for FABP1 Gene

  • This gene encodes the fatty acid binding protein found in liver. Fatty acid binding proteins are a family of small, highly conserved, cytoplasmic proteins that bind long-chain fatty acids and other hydrophobic ligands. This protein and FABP6 (the ileal fatty acid binding protein) are also able to bind bile acids. It is thought that FABPs roles include fatty acid uptake, transport, and metabolism. [provided by RefSeq, Mar 2011]

GeneCards Summary for FABP1 Gene

FABP1 (Fatty Acid Binding Protein 1) is a Protein Coding gene. Diseases associated with FABP1 include Hepatocellular Adenoma and Fatty Liver Disease. Among its related pathways are Lipoprotein metabolism and Fat digestion and absorption. Gene Ontology (GO) annotations related to this gene include chromatin binding and lipid binding. An important paralog of this gene is FABP6.

UniProtKB/Swiss-Prot for FABP1 Gene

  • Plays a role in lipoprotein-mediated cholesterol uptake in hepatocytes (PubMed:25732850). Binds cholesterol (PubMed:25732850). Binds free fatty acids and their coenzyme A derivatives, bilirubin, and some other small molecules in the cytoplasm. May be involved in intracellular lipid transport (By similarity).

Gene Wiki entry for FABP1 Gene

Additional gene information for FABP1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FABP1 Gene

Genomics for FABP1 Gene

GeneHancer (GH) Regulatory Elements for FABP1 Gene

Promoters and enhancers for FABP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I088125 Promoter/Enhancer 1.6 EPDnew ENCODE dbSUPER 586.1 -0.9 -855 6.7 FOXA2 MLX ARID4B ZNF48 ETS1 YY1 PAF1 RXRA SP5 NFYC FABP1 THNSL2 KRCC1 GC02P088146
GH02I088169 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 17.8 -42.4 -42377 1.7 POLR2A ZBTB11 PRDM10 ZFX ZBTB26 GABPA THNSL2 LOC101928347 FABP1
GH02I088144 Enhancer 0.9 ENCODE dbSUPER 20 -17.5 -17471 3 ELF3 ARID4B MAX THRB RAD21 RARA YY1 TEAD3 HOMEZ GATAD2A GC02P088146 THNSL2 FABP1 KRCC1 LOC101928347
GH02I088074 Enhancer 1 FANTOM5 Ensembl ENCODE 15.9 +53.2 53167 1.4 JUND POLR2A HLF CEBPA CEBPB CEBPG RAD21 ZNF7 FABP1 THNSL2 SMYD1 MIR4780
GH02I088066 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 11.6 +60.1 60100 3.6 PKNOX1 L3MBTL2 MAFK SMYD1 GC02M088051 FABP1 THNSL2 MIR4780
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FABP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FABP1 gene promoter:

Genomic Locations for FABP1 Gene

Genomic Locations for FABP1 Gene
chr2:88,122,982-88,128,131
(GRCh38/hg38)
Size:
5,150 bases
Orientation:
Minus strand
chr2:88,422,501-88,427,650
(GRCh37/hg19)

Genomic View for FABP1 Gene

Genes around FABP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FABP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FABP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FABP1 Gene

Proteins for FABP1 Gene

  • Protein details for FABP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P07148-FABPL_HUMAN
    Recommended name:
    Fatty acid-binding protein, liver
    Protein Accession:
    P07148

    Protein attributes for FABP1 Gene

    Size:
    127 amino acids
    Molecular mass:
    14208 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for FABP1 Gene

neXtProt entry for FABP1 Gene

Post-translational modifications for FABP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FABP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FABP1 Gene

Domains & Families for FABP1 Gene

Gene Families for FABP1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for FABP1 Gene

Suggested Antigen Peptide Sequences for FABP1 Gene

Graphical View of Domain Structure for InterPro Entry

P07148

UniProtKB/Swiss-Prot:

FABPL_HUMAN :
  • Forms a beta-barrel structure that accommodates hydrophobic ligands in its interior.
  • Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
Domain:
  • Forms a beta-barrel structure that accommodates hydrophobic ligands in its interior.
Family:
  • Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
genes like me logo Genes that share domains with FABP1: view

Function for FABP1 Gene

Molecular function for FABP1 Gene

GENATLAS Biochemistry:
fatty acid binding protein 1,liver
UniProtKB/Swiss-Prot Function:
Plays a role in lipoprotein-mediated cholesterol uptake in hepatocytes (PubMed:25732850). Binds cholesterol (PubMed:25732850). Binds free fatty acids and their coenzyme A derivatives, bilirubin, and some other small molecules in the cytoplasm. May be involved in intracellular lipid transport (By similarity).

Gene Ontology (GO) - Molecular Function for FABP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003682 chromatin binding IEA --
GO:0005324 long-chain fatty acid transporter activity IEA --
GO:0005504 fatty acid binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0005543 phospholipid binding IEA --
genes like me logo Genes that share ontologies with FABP1: view
genes like me logo Genes that share phenotypes with FABP1: view

Animal Models for FABP1 Gene

MGI Knock Outs for FABP1:

miRNA for FABP1 Gene

miRTarBase miRNAs that target FABP1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FABP1 Gene

Localization for FABP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FABP1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FABP1 gene
Compartment Confidence
extracellular 5
peroxisome 5
nucleus 5
cytosol 5
mitochondrion 2
plasma membrane 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Nucleoplasm (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for FABP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA,TAS --
GO:0005737 cytoplasm IEA --
GO:0005782 peroxisomal matrix ISS,IEA --
GO:0005829 cytosol TAS,IDA --
genes like me logo Genes that share ontologies with FABP1: view

Pathways & Interactions for FABP1 Gene

genes like me logo Genes that share pathways with FABP1: view

Gene Ontology (GO) - Biological Process for FABP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0015909 long-chain fatty acid transport IEA --
GO:0019216 regulation of lipid metabolic process TAS --
GO:0019433 triglyceride catabolic process TAS --
GO:0032000 positive regulation of fatty acid beta-oxidation IEA --
genes like me logo Genes that share ontologies with FABP1: view

No data available for SIGNOR curated interactions for FABP1 Gene

Drugs & Compounds for FABP1 Gene

(19) Drugs for FABP1 Gene - From: DrugBank, PharmGKB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Fenofibrate Approved Pharma 173
oleic acid Approved, Investigational, Vet_approved Pharma Full agonist, Agonist, Carrier 0
cholic acid Approved Pharma Full agonist, Agonist, Carrier 0
Butenoic Acid Experimental Pharma Carrier 0
Methylcysteine Experimental Pharma Carrier 0

(19) Additional Compounds for FABP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with FABP1: view

Transcripts for FABP1 Gene

mRNA/cDNA for FABP1 Gene

Unigene Clusters for FABP1 Gene

Fatty acid binding protein 1, liver:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FABP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5
SP1: - - - -
SP2: -
SP3: - -
SP4: -

Relevant External Links for FABP1 Gene

GeneLoc Exon Structure for
FABP1
ECgene alternative splicing isoforms for
FABP1

Expression for FABP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FABP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FABP1 Gene

This gene is overexpressed in Liver (x23.9), Colon - Transverse (x19.3), and Small Intestine - Terminal Ileum (x5.2).

Protein differential expression in normal tissues from HIPED for FABP1 Gene

This gene is overexpressed in Liver, secretome (21.8), Fetal Liver (13.1), Liver (12.4), and Colon (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FABP1 Gene



NURSA nuclear receptor signaling pathways regulating expression of FABP1 Gene:

FABP1

SOURCE GeneReport for Unigene cluster for FABP1 Gene:

Hs.380135

Evidence on tissue expression from TISSUES for FABP1 Gene

  • Intestine(4.9)
  • Liver(4.9)
  • Kidney(4.8)
  • Stomach(4.3)
  • Urine(2.3)
  • Blood(2.1)
genes like me logo Genes that share expression patterns with FABP1: view

No data available for Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FABP1 Gene

Orthologs for FABP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FABP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FABP1 33 34
  • 99.48 (n)
dog
(Canis familiaris)
Mammalia FABP1 33 34
  • 90.81 (n)
cow
(Bos Taurus)
Mammalia FABP1 33 34
  • 86.09 (n)
mouse
(Mus musculus)
Mammalia Fabp1 33 16 34
  • 85.3 (n)
rat
(Rattus norvegicus)
Mammalia Fabp1 33
  • 85.3 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FABP1 34
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FABP1 34
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves FABP1 33
  • 73.49 (n)
LFABP 34
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FABP1 34
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fabp1 33
  • 68.24 (n)
zebrafish
(Danio rerio)
Actinopterygii fabp1a 33 34
  • 67.2 (n)
fabp1b.1 34
  • 66 (a)
OneToMany
fabp1b.2 34
  • 53 (a)
OneToMany
Dr.19577 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.139 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4471 34
  • 35 (a)
OneToMany
Species where no ortholog for FABP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FABP1 Gene

ENSEMBL:
Gene Tree for FABP1 (if available)
TreeFam:
Gene Tree for FABP1 (if available)

Paralogs for FABP1 Gene

Paralogs for FABP1 Gene

(2) SIMAP similar genes for FABP1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with FABP1: view

Variants for FABP1 Gene

Sequence variations from dbSNP and Humsavar for FABP1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000074723 -- 88,124,280(-) T/C intron_variant
rs1000878160 -- 88,126,006(-) C/T intron_variant
rs1001112664 -- 88,128,486(-) T/C upstream_transcript_variant
rs1001263833 -- 88,125,177(-) C/A intron_variant
rs1002422621 -- 88,125,572(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FABP1 Gene

Variant ID Type Subtype PubMed ID
dgv61n16 CNV deletion 17901297
dgv6947n54 CNV gain 21841781
nsv1072005 CNV deletion 25765185
nsv1130752 CNV deletion 24896259
nsv1148611 CNV deletion 26484159
nsv582383 CNV gain 21841781
nsv582384 CNV loss 21841781
nsv582386 CNV loss 21841781
nsv834289 CNV gain 17160897

Variation tolerance for FABP1 Gene

Residual Variation Intolerance Score: 43.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.86; 74.08% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FABP1 Gene

Human Gene Mutation Database (HGMD)
FABP1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
FABP1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FABP1 Gene

Disorders for FABP1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for FABP1 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search FABP1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for FABP1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with FABP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FABP1 Gene

Publications for FABP1 Gene

  1. A Thr94Ala mutation in human liver fatty acid-binding protein contributes to reduced hepatic glycogenolysis and blunted elevation of plasma glucose levels in lipid-exposed subjects. (PMID: 17698986) Weickert MO … Möhlig M (American journal of physiology. Endocrinology and metabolism 2007) 2 3 22 44 58
  2. Effect of liver fatty acid binding protein (FABP) T94A missense mutation on plasma lipoprotein responsiveness to treatment with fenofibrate. (PMID: 15249972) Brouillette C … Vohl MC (Journal of human genetics 2004) 3 22 44 58
  3. Human FABP1 T94A variant enhances cholesterol uptake. (PMID: 25732850) Huang H … Schroeder F (Biochimica et biophysica acta 2015) 3 4 58
  4. Identification of type 2 diabetes-associated combination of SNPs using support vector machine. (PMID: 20416077) Ban HJ … Park KJ (BMC genetics 2010) 3 44 58
  5. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58

Products for FABP1 Gene

Sources for FABP1 Gene

Content
Loading form....