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Aliases for F10 Gene

Aliases for F10 Gene

  • Coagulation Factor X 2 3 3 5
  • Stuart-Prower Factor 3 4
  • Prothrombinase 3
  • Stuart Factor 4
  • EC 4
  • Factor Xa 3
  • Factor X 3
  • FXA 3
  • FX 3

External Ids for F10 Gene

Previous GeneCards Identifiers for F10 Gene

  • GC13P112387
  • GC13P108414
  • GC13P112863
  • GC13P111725
  • GC13P112825
  • GC13P113777
  • GC13P094215

Summaries for F10 Gene

Entrez Gene Summary for F10 Gene

  • This gene encodes the vitamin K-dependent coagulation factor X of the blood coagulation cascade. This factor undergoes multiple processing steps before its preproprotein is converted to a mature two-chain form by the excision of the tripeptide RKR. Two chains of the factor are held together by 1 or more disulfide bonds; the light chain contains 2 EGF-like domains, while the heavy chain contains the catalytic domain which is structurally homologous to those of the other hemostatic serine proteases. The mature factor is activated by the cleavage of the activation peptide by factor IXa (in the intrisic pathway), or by factor VIIa (in the extrinsic pathway). The activated factor then converts prothrombin to thrombin in the presence of factor Va, Ca+2, and phospholipid during blood clotting. Mutations of this gene result in factor X deficiency, a hemorrhagic condition of variable severity. Alternative splicing results in multiple transcript variants encoding different isoforms that may undergo similar proteolytic processing to generate mature polypeptides. [provided by RefSeq, Aug 2015]

GeneCards Summary for F10 Gene

F10 (Coagulation Factor X) is a Protein Coding gene. Diseases associated with F10 include Factor X Deficiency and Carotid Artery Thrombosis. Among its related pathways are Formation of Fibrin Clot (Clotting Cascade) and Gamma carboxylation, hypusine formation and arylsulfatase activation. Gene Ontology (GO) annotations related to this gene include calcium ion binding and phospholipid binding. An important paralog of this gene is F9.

UniProtKB/Swiss-Prot for F10 Gene

  • Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.

Gene Wiki entry for F10 Gene

Additional gene information for F10 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for F10 Gene

Genomics for F10 Gene

GeneHancer (GH) Regulatory Elements for F10 Gene

Promoters and enhancers for F10 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J113121 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 658.6 +0.1 110 2 PKNOX1 FOXA2 ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 NFKBIZ RXRA F10 F7 F10-AS1 GC13M113076
GH13J113206 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.4 +86.0 86043 5 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 PCID2 CUL4A TUBGCP3 PROZ GAS6-AS1 GAS6 LINC01043 DCUN1D2-AS SPACA7 LDHBP1
GH13J113182 Enhancer 1.4 Ensembl ENCODE dbSUPER 11 +63.4 63442 6.5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 SLC30A9 FOS PROZ CUL4A PCID2 F10-AS1 KARSP2 F10 GRTP1 F7 LAMP1 ENSG00000269356
GH13J113151 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.9 +30.7 30733 3.6 MLX ARNT ZFP64 ARID4B DMAP1 ZNF48 YY1 GLIS2 ZNF202 SP5 PROZ LOC102724474 PCID2 TUBGCP3 KARSP2 F10-AS1 F10 DCUN1D2-AS CUL4A ATP11A
GH13J113021 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.4 -99.8 -99840 2.5 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 FOS RXRA MCF2L MCF2L-AS1 F7 PROZ F10 F10-AS1 KARSP2 ENSG00000269376 PIR52168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around F10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the F10 gene promoter:
  • AP-1
  • c-Jun
  • c-Fos
  • ATF-2
  • E2F-4
  • E2F
  • E2F-1

Genomic Locations for F10 Gene

Genomic Locations for F10 Gene
26,731 bases
Plus strand
26,731 bases
Plus strand

Genomic View for F10 Gene

Genes around F10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
F10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for F10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for F10 Gene

Proteins for F10 Gene

  • Protein details for F10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coagulation factor X
    Protein Accession:
    Secondary Accessions:
    • Q14340

    Protein attributes for F10 Gene

    488 amino acids
    Molecular mass:
    54732 Da
    Quaternary structure:
    • The two chains are formed from a single-chain precursor by the excision of two Arg residues and are held together by 1 or more disulfide bonds. Forms a heterodimer with SERPINA5.

    Three dimensional structures from OCA and Proteopedia for F10 Gene

neXtProt entry for F10 Gene

Post-translational modifications for F10 Gene

  • The vitamin K-dependent, enzymatic carboxylation of some glutamate residues allows the modified protein to bind calcium.
  • N- and O-glycosylated. O-glycosylated with core 1 or possibly core 8 glycans.
  • The activation peptide is cleaved by factor IXa (in the intrinsic pathway), or by factor VIIa (in the extrinsic pathway).
  • The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains.
  • Glycosylation at Thr483, isoforms=231, Asn221, isoforms=211, and isoforms=199
  • Modification sites at PhosphoSitePlus
  • Glycosylation from GlyConnect
    • FA10_HUMAN (102)

Other Protein References for F10 Gene

No data available for DME Specific Peptides for F10 Gene

Domains & Families for F10 Gene

Gene Families for F10 Gene

Human Protein Atlas (HPA):
  • Candidate cardiovascular disease genes
  • Disease related genes
  • Enzymes
  • FDA approved drug targets
  • Plasma proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for F10 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the peptidase S1 family.
  • Belongs to the peptidase S1 family.
genes like me logo Genes that share domains with F10: view

Function for F10 Gene

Molecular function for F10 Gene

UniProtKB/Swiss-Prot Function:
Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
UniProtKB/Swiss-Prot CatalyticActivity:
Selective cleavage of Arg- -Thr and then Arg- -Ile bonds in prothrombin to form thrombin.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by SERPINA5 and SERPINA10.
GENATLAS Biochemistry:
coagulation factor X (Stuart Prower),vitamin K-dependent

Enzyme Numbers (IUBMB) for F10 Gene

Phenotypes From GWAS Catalog for F10 Gene

Gene Ontology (GO) - Molecular Function for F10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004252 serine-type endopeptidase activity TAS --
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 6323392
GO:0005543 phospholipid binding IDA 17469850
GO:0008233 peptidase activity IEA --
genes like me logo Genes that share ontologies with F10: view
genes like me logo Genes that share phenotypes with F10: view

Human Phenotype Ontology for F10 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for F10 Gene

MGI Knock Outs for F10:
  • F10 F10<tm1Ccmt>
  • F10 F10<tm1Edr>
  • F10 F10<tm1b(EUCOMM)Hmgu>

Animal Model Products

  • Taconic Biosciences Mouse Models for F10

Clone Products

No data available for Transcription Factor Targets and HOMER Transcription for F10 Gene

Localization for F10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for F10 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for F10 gene
Compartment Confidence
plasma membrane 5
extracellular 5
endoplasmic reticulum 5
golgi apparatus 5
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for F10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA,TAS --
GO:0005788 endoplasmic reticulum lumen TAS --
GO:0005796 Golgi lumen TAS --
GO:0005886 plasma membrane TAS --
GO:0031233 intrinsic component of external side of plasma membrane IC 17469850
genes like me logo Genes that share ontologies with F10: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for F10 Gene

Pathways & Interactions for F10 Gene

genes like me logo Genes that share pathways with F10: view

Gene Ontology (GO) - Biological Process for F10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006465 signal peptide processing TAS --
GO:0006508 proteolysis IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0007596 blood coagulation IC,TAS --
GO:0007597 blood coagulation, intrinsic pathway TAS --
genes like me logo Genes that share ontologies with F10: view

No data available for SIGNOR curated interactions for F10 Gene

Drugs & Compounds for F10 Gene

(145) Drugs for F10 Gene - From: DrugBank, DGIdb, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Apixaban Approved Pharma inhibitor, Target Factor Xa inhibitor 175
Rivaroxaban Approved Pharma Target, antagonist Factor Xa inhibitor 291
Heparin Approved, Investigational Pharma Antagonist, cofactor, Target, inhibitor 905
Betrixaban Approved, Investigational Pharma Target, inhibitor Factor Xa inhibitor 0
Edoxaban Approved Pharma Target, inhibitor Factor Xa inhibitor 74

(52) Additional Compounds for F10 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with F10: view

Transcripts for F10 Gene

mRNA/cDNA for F10 Gene

Unigene Clusters for F10 Gene

Coagulation factor X:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for F10 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b · 9c
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5: -

Relevant External Links for F10 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for F10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for F10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for F10 Gene

This gene is overexpressed in Liver (x12.2).

Protein differential expression in normal tissues from HIPED for F10 Gene

This gene is overexpressed in Serum (35.3), Plasma (16.0), and Synovial fluid (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for F10 Gene

Protein tissue co-expression partners for F10 Gene

NURSA nuclear receptor signaling pathways regulating expression of F10 Gene:


SOURCE GeneReport for Unigene cluster for F10 Gene:


mRNA Expression by UniProt/SwissProt for F10 Gene:

Tissue specificity: Plasma; synthesized in the liver.

Evidence on tissue expression from TISSUES for F10 Gene

  • Liver(4.6)
  • Blood(3)
  • Heart(2.4)

Phenotype-based relationships between genes and organs from Gene ORGANizer for F10 Gene

Germ Layers:
  • ectoderm
  • mesoderm
  • cardiovascular
  • digestive
  • nervous
  • reproductive
  • skeletal muscle
  • skeleton
Head and neck:
  • brain
  • face
  • head
  • mouth
  • nose
  • uterus
  • ankle
  • digit
  • elbow
  • finger
  • foot
  • hand
  • hip
  • knee
  • lower limb
  • shoulder
  • toe
  • upper limb
  • wrist
  • blood
  • blood vessel
  • coagulation system
genes like me logo Genes that share expression patterns with F10: view

Orthologs for F10 Gene

This gene was present in the common ancestor of animals.

Orthologs for F10 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia F10 34 33
  • 99.52 (n)
(Canis familiaris)
Mammalia F10 34 33
  • 79.52 (n)
(Mus musculus)
Mammalia F10 16 34 33
  • 78.04 (n)
(Rattus norvegicus)
Mammalia F10 33
  • 77.24 (n)
(Bos Taurus)
Mammalia F10 34 33
  • 76.88 (n)
(Ornithorhynchus anatinus)
Mammalia F10 34
  • 63 (a)
(Monodelphis domestica)
Mammalia F10 34
  • 60 (a)
(Gallus gallus)
Aves F10 34 33
  • 60.03 (n)
(Anolis carolinensis)
Reptilia F10 34
  • 48 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia f10 33
  • 57.65 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC68454 33
(Danio rerio)
Actinopterygii f10 34 33 33
  • 58.1 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9593 33
fruit fly
(Drosophila melanogaster)
Insecta CG11836 35 33
  • 49.21 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004570 33
  • 45.94 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 17 (a)
Species where no ortholog for F10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for F10 Gene

Gene Tree for F10 (if available)
Gene Tree for F10 (if available)
Evolutionary constrained regions (ECRs) for F10: view image

Paralogs for F10 Gene

Paralogs for F10 Gene

(16) SIMAP similar genes for F10 Gene using alignment to 6 proteins:

  • FA10_HUMAN
  • O15095_HUMAN
genes like me logo Genes that share paralogs with F10: view

Variants for F10 Gene

Sequence variations from dbSNP and Humsavar for F10 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs104894392 pathogenic, Factor X deficiency, Factor X deficiency (FA10D) [MIM:227600] 113,149,146(+) C/T 3_prime_UTR_variant, coding_sequence_variant, missense_variant
rs111737184 uncertain-significance, Factor X deficiency 113,140,944(+) C/T coding_sequence_variant, intron_variant, synonymous_variant
rs121964939 Factor X deficiency (FA10D) [MIM:227600] 113,129,541(+) G/A coding_sequence_variant, missense_variant
rs121964940 Factor X deficiency (FA10D) [MIM:227600] 113,149,197(+) C/T 3_prime_UTR_variant, coding_sequence_variant, missense_variant
rs121964941 Factor X deficiency (FA10D) [MIM:227600] 113,149,170(+) T/C 3_prime_UTR_variant, coding_sequence_variant, missense_variant

Structural Variations from Database of Genomic Variants (DGV) for F10 Gene

Variant ID Type Subtype PubMed ID
dgv3426n54 CNV gain 21841781
esv1499407 CNV deletion 17803354
esv2678487 CNV deletion 23128226
esv2748261 CNV deletion 23290073
esv3551140 CNV deletion 23714750
esv3551141 CNV deletion 23714750
nsv1046663 CNV gain 25217958
nsv1048814 CNV gain 25217958
nsv1051556 CNV gain 25217958
nsv1070202 CNV deletion 25765185
nsv1113614 CNV deletion 24896259
nsv518044 CNV gain 19592680
nsv563282 CNV loss 21841781
nsv563283 CNV loss 21841781
nsv563284 CNV loss 21841781
nsv563285 CNV loss 21841781
nsv818996 CNV gain 17921354
nsv826819 CNV gain 20364138
nsv832724 CNV loss 17160897
nsv951926 CNV deletion 24416366
nsv958120 CNV deletion 24416366

Variation tolerance for F10 Gene

Residual Variation Intolerance Score: 34.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.20; 39.76% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for F10 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for F10 Gene

Disorders for F10 Gene

MalaCards: The human disease database

(33) MalaCards diseases for F10 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
factor x deficiency
  • f10 deficiency
carotid artery thrombosis
scott syndrome
  • scts
hemorrhagic disease
  • hemorrhagic diathesis
  • haemarthrosis of shoulder joint
- elite association - COSMIC cancer census association via MalaCards
Search F10 in MalaCards View complete list of genes associated with diseases


  • Factor X deficiency (FA10D) [MIM:227600]: A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis. {ECO:0000269 PubMed:10468877, ECO:0000269 PubMed:10739379, ECO:0000269 PubMed:10746568, ECO:0000269 PubMed:11248282, ECO:0000269 PubMed:11728527, ECO:0000269 PubMed:12574802, ECO:0000269 PubMed:12945883, ECO:0000269 PubMed:15075089, ECO:0000269 PubMed:15650540, ECO:0000269 PubMed:17393015, ECO:0000269 PubMed:19135706, ECO:0000269 PubMed:1973167, ECO:0000269 PubMed:1985698, ECO:0000269 PubMed:25313940, ECO:0000269 PubMed:26222694, ECO:0000269 PubMed:2790181, ECO:0000269 PubMed:7669671, ECO:0000269 PubMed:7860069, ECO:0000269 PubMed:8529633, ECO:0000269 PubMed:8845463, ECO:0000269 PubMed:8910490}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Genatlas disease for F10 Gene

bleeding diathesis (FX deficiency)

Additional Disease Information for F10

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with F10: view

Publications for F10 Gene

  1. Characterization of a homozygous Gly11Val mutation in the Gla domain of coagulation factor X. (PMID: 19135706) Chafa O … LeBonniec BF (Thrombosis research 2009) 3 4 22 58
  2. Impaired prothrombinase activity of factor X Gly381Asp results in severe familial CRM+ FX deficiency. (PMID: 12574802) Pinotti M … Bernardi F (Thrombosis and haemostasis 2003) 3 4 22 58
  3. Structure of human des(1-45) factor Xa at 2.2 A resolution. (PMID: 8355279) Padmanabhan K … Kisiel W (Journal of molecular biology 1993) 3 4 22 58
  4. Cloning and expression in COS-1 cells of a full-length cDNA encoding human coagulation factor X. (PMID: 1902434) Messier TL … Church WR (Gene 1991) 3 4 22 58
  5. Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. (PMID: 19851296) Oguri M … Yamada Y (American journal of hypertension 2010) 3 44 58

Products for F10 Gene