Aliases for EZR-AS1 Gene

Subcategory (RNA class) for EZR-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for EZR-AS1 Gene

  • EZR Antisense RNA 1 2 3 5
  • EZR Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0054698 167
  • NONHSAG045266 92
  • Lnc-SYTL3-150 168
  • EZR-AS1 2

External Ids for EZR-AS1 Gene

Previous GeneCards Identifiers for EZR-AS1 Gene

  • GC06P159240
  • GC06P159241

Summaries for EZR-AS1 Gene

GeneCards Summary for EZR-AS1 Gene

EZR-AS1 (EZR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EZR-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EZR-AS1 Gene

Genomics for EZR-AS1 Gene

GeneHancer (GH) Regulatory Elements for EZR-AS1 Gene

Promoters and enhancers for EZR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J158807 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.9 -3891 13.4 HNRNPK CTCF ZSCAN5C SIN3A NRF1 TCF12 USF1 POLR2G SP1 NCOR1 EZR WTAP ENSG00000213076 RNU6-293P RSPH3 SYTL3 TMEM181 DYNLT1 TAGAP EZR-AS1
GH06J158825 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +8.6 8619 2.8 AFF1 RELA CTBP1 TRIM22 KDM5B TCF12 ZNF282 FOXA2 NFIC ZBTB17 EZR ENSG00000213076 RNU6-293P DYNLT1 SYTL3 RSPH3 TMEM181 EZR-AS1 lnc-SYTL3-8
GH06J158822 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 +4.9 4922 1 ATF2 EZR EZR-AS1 lnc-SYTL3-8
GH06J158821 Enhancer 0.4 Ensembl 0.7 +3.7 3722 0.2 NR2F1 JUNB BHLHE40 RUNX3 EZR EZR-AS1 lnc-SYTL3-8
GH06J158830 Enhancer 0.6 Ensembl 0.4 +12.1 12122 0.2 SKI FOXA2 NR2F2 ZBTB33 JUND SMAD4 RAD21 RXRA MAX HNF4A ENSG00000213076 RNU6-293P DYNLT1 SYTL3 RSPH3 EZR EZR-AS1 lnc-SYTL3-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EZR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EZR-AS1 Gene

Genomic Locations for EZR-AS1 Gene
chr6:158,817,979-158,832,978
(GRCh38/hg38)
Size:
15,000 bases
Orientation:
Plus strand
chr6:159,239,043-159,241,625
(GRCh37/hg19)
Size:
2,583 bases
Orientation:
Plus strand

Genomic View for EZR-AS1 Gene

Genes around EZR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EZR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EZR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EZR-AS1 Gene

Proteins for EZR-AS1 Gene

Post-translational modifications for EZR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EZR-AS1 Gene

Domains & Families for EZR-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EZR-AS1 Gene

Function for EZR-AS1 Gene

Phenotypes From GWAS Catalog for EZR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EZR-AS1 Gene

Localization for EZR-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EZR-AS1 gene
Compartment Confidence
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EZR-AS1 Gene

Pathways & Interactions for EZR-AS1 Gene

PathCards logo

SuperPathways for EZR-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for EZR-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for EZR-AS1 Gene

Drugs & Compounds for EZR-AS1 Gene

No Compound Related Data Available

Transcripts for EZR-AS1 Gene

mRNA/cDNA for EZR-AS1 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EZR-AS1 Gene

No ASD Table

Relevant External Links for EZR-AS1 Gene

GeneLoc Exon Structure for
EZR-AS1

Expression for EZR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for EZR-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for EZR-AS1

genes like me logo Genes that share expression patterns with EZR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EZR-AS1 Gene

Orthologs for EZR-AS1 Gene

Evolution for EZR-AS1 Gene

ENSEMBL:
Gene Tree for EZR-AS1 (if available)
TreeFam:
Gene Tree for EZR-AS1 (if available)

No data available for Orthologs for EZR-AS1 Gene

Paralogs for EZR-AS1 Gene

No data available for Paralogs for EZR-AS1 Gene

Variants for EZR-AS1 Gene

Additional dbSNP identifiers (rs#s) for EZR-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for EZR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1112910 CNV deletion 24896259

Additional Variant Information for EZR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EZR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for EZR-AS1 Gene

Disorders for EZR-AS1 Gene

Additional Disease Information for EZR-AS1

No disorders were found for EZR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EZR-AS1 Gene

Publications for EZR-AS1 Gene

  1. The interaction of lncRNA EZR-AS1 with SMYD3 maintains overexpression of EZR in ESCC cells. (PMID: 29253179) Zhang XD … Xu LY (Nucleic acids research 2018) 3 54

Products for EZR-AS1 Gene

Sources for EZR-AS1 Gene