Aliases for EXTL3-AS1 Gene

Subcategory (RNA class) for EXTL3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for EXTL3-AS1 Gene

  • EXTL3 Antisense RNA 1 2 3 5
  • EXTL3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • EXTL3-AS1 2 170
  • Chromosome 8 Open Reading Frame 50 2
  • HSALNG0064240 169
  • NONHSAG049856 94
  • C8orf50 3

External Ids for EXTL3-AS1 Gene

Previous HGNC Symbols for EXTL3-AS1 Gene

  • C8orf50

Previous GeneCards Identifiers for EXTL3-AS1 Gene

  • GC08M028554
  • GC08M028696

Summaries for EXTL3-AS1 Gene

GeneCards Summary for EXTL3-AS1 Gene

EXTL3-AS1 (EXTL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EXTL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EXTL3-AS1 Gene

Genomics for EXTL3-AS1 Gene

GeneHancer (GH) Regulatory Elements for EXTL3-AS1 Gene

Promoters and enhancers for EXTL3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EXTL3-AS1 Gene

Genomic Locations for EXTL3-AS1 Gene
chr8:28,679,012-28,702,124
(GRCh38/hg38)
Size:
23,113 bases
Orientation:
Minus strand
chr8:28,553,718-28,558,981
(GRCh37/hg19)
Size:
5,264 bases
Orientation:
Minus strand

Genomic View for EXTL3-AS1 Gene

Genes around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EXTL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EXTL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXTL3-AS1 Gene

Proteins for EXTL3-AS1 Gene

Post-translational modifications for EXTL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EXTL3-AS1 Gene

Domains & Families for EXTL3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EXTL3-AS1 Gene

Function for EXTL3-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EXTL3-AS1 Gene

Localization for EXTL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EXTL3-AS1 Gene

Pathways & Interactions for EXTL3-AS1 Gene

PathCards logo

SuperPathways for EXTL3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EXTL3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EXTL3-AS1 Gene

Drugs & Compounds for EXTL3-AS1 Gene

No Compound Related Data Available

Transcripts for EXTL3-AS1 Gene

mRNA/cDNA for EXTL3-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(22) RNACentral transcripts :
(21) LNCipedia transcripts :
(10) NONCODE transcripts :
(8) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EXTL3-AS1 Gene

No ASD Table

Relevant External Links for EXTL3-AS1 Gene

GeneLoc Exon Structure for
EXTL3-AS1
ECgene alternative splicing isoforms for
EXTL3-AS1

Expression for EXTL3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EXTL3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EXTL3-AS1 Gene

This gene is overexpressed in Testis (x5.0).
genes like me logo Genes that share expression patterns with EXTL3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EXTL3-AS1 Gene

Orthologs for EXTL3-AS1 Gene

Evolution for EXTL3-AS1 Gene

ENSEMBL:
Gene Tree for EXTL3-AS1 (if available)
TreeFam:
Gene Tree for EXTL3-AS1 (if available)

No data available for Orthologs for EXTL3-AS1 Gene

Paralogs for EXTL3-AS1 Gene

No data available for Paralogs for EXTL3-AS1 Gene

Variants for EXTL3-AS1 Gene

Sequence variations from dbSNP and Humsavar for EXTL3-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000023436 -- 28,698,166(-) A/G downstream_transcript_variant
rs1000195606 -- 28,701,765(-) G/A/T upstream_transcript_variant
rs1000631054 -- 28,701,967(-) T/G upstream_transcript_variant
rs1001467111 -- 28,699,451(-) C/A/T non_coding_transcript_variant
rs1001902194 -- 28,701,024(-) G/A intron_variant

Additional Variant Information for EXTL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EXTL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EXTL3-AS1 Gene

Disorders for EXTL3-AS1 Gene

Additional Disease Information for EXTL3-AS1

No disorders were found for EXTL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EXTL3-AS1 Gene

Publications for EXTL3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56

No data available for External Links for EXTL3-AS1 Gene

Products for EXTL3-AS1 Gene

Sources for EXTL3-AS1 Gene