Aliases for EXOSC10-AS1 Gene

Subcategory (RNA class) for EXOSC10-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for EXOSC10-AS1 Gene

  • EXOSC10 Antisense RNA 1 2 3 5
  • NONHSAG000360 94
  • HSALNG0000845 169
  • Lnc-TARDBP-2 170

External Ids for EXOSC10-AS1 Gene

Summaries for EXOSC10-AS1 Gene

GeneCards Summary for EXOSC10-AS1 Gene

EXOSC10-AS1 (EXOSC10 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EXOSC10-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EXOSC10-AS1 Gene

Genomics for EXOSC10-AS1 Gene

GeneHancer (GH) Regulatory Elements for EXOSC10-AS1 Gene

Promoters and enhancers for EXOSC10-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J011098 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.3 -317 2.5 SIN3A POLR2A HCFC1 ZNF362 L3MBTL2 MAX ZBTB33 NKRF GTF2F1 ZFX EXOSC10 EXOSC10-AS1 TARDBP UBIAD1 ENSG00000226849 KIAA2013 CLCN6 MTOR piR-47211-003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EXOSC10-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EXOSC10-AS1 Gene

Genomic Locations for EXOSC10-AS1 Gene
chr1:11,099,675-11,102,105
(GRCh38/hg38)
Size:
2,431 bases
Orientation:
Plus strand
chr1:11,159,732-11,162,157
(GRCh37/hg19)
Size:
2,426 bases
Orientation:
Plus strand

Genomic View for EXOSC10-AS1 Gene

Genes around EXOSC10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EXOSC10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EXOSC10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXOSC10-AS1 Gene

Proteins for EXOSC10-AS1 Gene

Post-translational modifications for EXOSC10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EXOSC10-AS1 Gene

Domains & Families for EXOSC10-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EXOSC10-AS1 Gene

Function for EXOSC10-AS1 Gene

Phenotypes From GWAS Catalog for EXOSC10-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EXOSC10-AS1 Gene

Localization for EXOSC10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EXOSC10-AS1 Gene

Pathways & Interactions for EXOSC10-AS1 Gene

PathCards logo

SuperPathways for EXOSC10-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EXOSC10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EXOSC10-AS1 Gene

Drugs & Compounds for EXOSC10-AS1 Gene

No Compound Related Data Available

Transcripts for EXOSC10-AS1 Gene

mRNA/cDNA for EXOSC10-AS1 Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(5) NONCODE transcripts :
(2) LncBook transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for EXOSC10-AS1 Gene

No ASD Table

Relevant External Links for EXOSC10-AS1 Gene

GeneLoc Exon Structure for
EXOSC10-AS1
ECgene alternative splicing isoforms for
EXOSC10-AS1

Expression for EXOSC10-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EXOSC10-AS1 Gene

Orthologs for EXOSC10-AS1 Gene

Evolution for EXOSC10-AS1 Gene

ENSEMBL:
Gene Tree for EXOSC10-AS1 (if available)
TreeFam:
Gene Tree for EXOSC10-AS1 (if available)

No data available for Orthologs for EXOSC10-AS1 Gene

Paralogs for EXOSC10-AS1 Gene

No data available for Paralogs for EXOSC10-AS1 Gene

Variants for EXOSC10-AS1 Gene

Sequence variations from dbSNP and Humsavar for EXOSC10-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000002776 -- 11,098,949(+) T/A upstream_transcript_variant
rs1000066567 -- 11,099,135(+) G/A upstream_transcript_variant
rs1001153464 -- 11,100,610(+) C/G intron_variant
rs1001439077 -- 11,098,296(+) T/C upstream_transcript_variant
rs1001850115 -- 11,099,755(+) A/C/G genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant

Additional Variant Information for EXOSC10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EXOSC10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EXOSC10-AS1 Gene

Disorders for EXOSC10-AS1 Gene

No disorders were found for EXOSC10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EXOSC10-AS1 Gene

Publications for EXOSC10-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for EXOSC10-AS1 Gene

Sources for EXOSC10-AS1 Gene