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Aliases for EWSAT1 Gene

Subcategory (RNA class) for EWSAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EWSAT1 Gene

  • Ewing Sarcoma Associated Transcript 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 277 2 3
  • Transmembrane Protein 84 2 3
  • Testicular Tissue Protein Li 207 3
  • Non-Protein Coding RNA 277 2
  • NCRNA00277 3
  • LINC00277 3
  • TMEM84 3

External Ids for EWSAT1 Gene

Previous HGNC Symbols for EWSAT1 Gene

  • TMEM84
  • NCRNA00277
  • LINC00277

Summaries for EWSAT1 Gene

GeneCards Summary for EWSAT1 Gene

EWSAT1 (Ewing Sarcoma Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with EWSAT1 include Ewing Sarcoma.

Additional gene information for EWSAT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EWSAT1 Gene

Genomics for EWSAT1 Gene

GeneHancer (GH) Regulatory Elements for EWSAT1 Gene

Promoters and enhancers for EWSAT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I069073 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 550.8 +1.6 1620 1.5 NEUROD1 SIN3A GLI4 ZNF2 YY1 GLIS2 ZNF213 ZNF416 ZNF207 KLF7 EWSAT1 NOX5 ENSG00000259222
GH15I069087 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.0 18038 6 PKNOX1 SIN3A ZNF2 NCOA2 FOS DEK YY2 ZNF585B GLIS1 STAT3 CLN6 ENSG00000259222 EWSAT1 GC15M069102
GH15I069080 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.5 9455 4.6 MZF1 RFX5 ZNF335 ELK1 ZNF366 SCRT2 RCOR1 ELK4 ZNF680 CEBPB ENSG00000259222 EWSAT1 GC15M069102
GH15I069058 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -13.3 -13268 1.8 PKNOX1 ARID4B SIN3A ZNF2 IRF4 ZNF213 ARID2 ZNF143 KLF7 ZNF548 PIR43046 EWSAT1 NOX5
GH15I069086 Enhancer 0.7 ENCODE dbSUPER 0.4 +13.9 13891 1.5 SP1 USF1 MAX PRDM10 REST ENSG00000259222 EWSAT1 GC15M069102
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EWSAT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EWSAT1 Gene

Genomic Locations for EWSAT1 Gene
chr15:69,072,926-69,095,824
(GRCh38/hg38)
Size:
22,899 bases
Orientation:
Plus strand
chr15:69,365,266-69,388,164
(GRCh37/hg19)

Genomic View for EWSAT1 Gene

Genes around EWSAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EWSAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EWSAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EWSAT1 Gene

Proteins for EWSAT1 Gene

Post-translational modifications for EWSAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EWSAT1 Gene

Domains & Families for EWSAT1 Gene

Gene Families for EWSAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EWSAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EWSAT1 Gene

Function for EWSAT1 Gene

Phenotypes From GWAS Catalog for EWSAT1 Gene

genes like me logo Genes that share phenotypes with EWSAT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EWSAT1 Gene

Localization for EWSAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EWSAT1 Gene

Pathways & Interactions for EWSAT1 Gene

SuperPathways for EWSAT1 Gene

No Data Available

Interacting Proteins for EWSAT1 Gene

Gene Ontology (GO) - Biological Process for EWSAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EWSAT1 Gene

Drugs & Compounds for EWSAT1 Gene

No Compound Related Data Available

Transcripts for EWSAT1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EWSAT1 Gene

No ASD Table

Relevant External Links for EWSAT1 Gene

GeneLoc Exon Structure for
EWSAT1
ECgene alternative splicing isoforms for
EWSAT1

Expression for EWSAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EWSAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of EWSAT1 Gene:

EWSAT1
genes like me logo Genes that share expression patterns with EWSAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EWSAT1 Gene

Orthologs for EWSAT1 Gene

Evolution for EWSAT1 Gene

ENSEMBL:
Gene Tree for EWSAT1 (if available)
TreeFam:
Gene Tree for EWSAT1 (if available)

No data available for Orthologs for EWSAT1 Gene

Paralogs for EWSAT1 Gene

No data available for Paralogs for EWSAT1 Gene

Variants for EWSAT1 Gene

Sequence variations from dbSNP and Humsavar for EWSAT1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000164110 -- 69,079,834(+) A/G upstream_transcript_variant
rs1000211337 -- 69,092,737(+) C/T intron_variant
rs1000275900 -- 69,087,611(+) A/T intron_variant
rs1000407364 -- 69,081,966(+) C/T intron_variant
rs1000562267 -- 69,084,875(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EWSAT1 Gene

Variant ID Type Subtype PubMed ID
nsv569808 CNV loss 21841781
nsv1050604 CNV gain 25217958

Additional Variant Information for EWSAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EWSAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EWSAT1 Gene

Disorders for EWSAT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for EWSAT1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
ewing sarcoma
  • es
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for EWSAT1

genes like me logo Genes that share disorders with EWSAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EWSAT1 Gene

Publications for EWSAT1 Gene

  1. Long Noncoding RNA EWSAT1 Promotes Osteosarcoma Cell Growth and Metastasis Through Suppression of MEG3 Expression. (PMID: 27860482) Sun L … Cui T (DNA and cell biology 2016) 2 3 58
  2. Long non-coding RNA EWSAT1 promotes human nasopharyngeal carcinoma cell growth in vitro by targeting miR-326/-330-5p. (PMID: 27816050) Song P … Yin SC (Aging 2016) 2 3 58
  3. Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis. (PMID: 25401475) Marques Howarth M … Sweet-Cordero EA (The Journal of clinical investigation 2014) 2 3 58
  4. LncRNA EWSAT1 promotes ovarian cancer progression through targeting miR-330-5p expression. (PMID: 28979684) Fu X … Xu Y (American journal of translational research 2017) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for EWSAT1 Gene

Sources for EWSAT1 Gene

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