Aliases for ETS1-AS1 Gene

Data sources for ETS1-AS1 Gene:

Subcategory (RNA class) for ETS1-AS1 Gene

lncRNA

Aliases for ETS1-AS1 Gene

External Ids for ETS1-AS1 Gene

Summaries for ETS1-AS1 Gene

GeneCards Summary for ETS1-AS1 Gene

ETS1-AS1 (ETS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ETS1-AS1 include Neuroblastoma.

Additional gene information for ETS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ETS1-AS1 Gene

Genomics for ETS1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ETS1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J128527 Enhancer 0.5 ENCODE dbSUPER 250.7 +1.8 1802 0.7 SPI1 PRDM1 ETS1-AS1 lnc-FLI1-4 ETS1
GH11J128461 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 -31.8 -31758 65 SP1 BCL11A CEBPA POLR2A CTCF ZIC2 ZNF610 CEBPB ZNF513 SIN3A ETS1 ETS1-AS1 FLI1 HSALNG0088101 HSALNG0088102 MIR6090 HSALNG0088100
GH11J128620 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +99.8 99796 10.8 CTCF ZNF395 REST TRIM22 RXRA EBF1 SMC3 RAD21 MAX FOSL1 FLI1 ETS1 SENCR ETS1-AS1 LOC105369568 LOC101929538
GH11J128607 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +84.9 84927 6.8 SP1 IRF4 RXRA EBF1 SMC3 SMARCA5 MAX CBFB BHLHE40 PTBP1 ETS1-AS1 ETS1 FLI1 LOC105369568 LOC101929538
GH11J128288 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11 -228.1 -228127 18.3 SP1 BCL11A FEZF1 POLR2A CTCF SIN3A TRIM22 IRF4 MAFF RXRA ETS1 FLI1 ETS1-AS1 SENCR LOC107984408 lnc-FLI1-3 HSALNG0088094 HSALNG0088091-002 lnc-ETS1-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ETS1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ETS1-AS1 Gene

Latest Assembly
chr11:128,526,141-128,530,389
(GRCh38/hg38)
Size:
4,249 bases
Orientation:
Plus strand

Previous Assembly
chr11:128,396,037-128,400,278
(GRCh37/hg19 by Entrez Gene)
Size:
4,242 bases
Orientation:
Plus strand

chr11:128,396,037-128,400,284
(GRCh37/hg19 by Ensembl)
Size:
4,248 bases
Orientation:
Plus strand

Genomic View for ETS1-AS1 Gene

Genes around ETS1-AS1 on UCSC Golden Path with GeneCards custom track
ETS1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ETS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ETS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ETS1-AS1 Gene

Proteins for ETS1-AS1 Gene

Post-translational modifications for ETS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ETS1-AS1 Gene

Domains & Families for ETS1-AS1 Gene

Gene Families for ETS1-AS1 Gene

genes like me logo Genes that share domains with ETS1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ETS1-AS1 Gene

Function for ETS1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ETS1-AS1 Gene

Localization for ETS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ETS1-AS1 Gene

Pathways & Interactions for ETS1-AS1 Gene

PathCards logo

SuperPathways for ETS1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ETS1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ETS1-AS1 Gene

Drugs & Compounds for ETS1-AS1 Gene

No Compound Related Data Available

Transcripts for ETS1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ETS1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C72EB_9606 lncRNA 1387 4

Ensembl: ENST00000525706 (view in UCSC) ,

LncBook: HSALNT0183231,

LNCipedia: lnc-FLI1-2:1,

NONCODE: NONHSAT025064.2,

URS000075B558_9606 lncRNA 1381 2

RefSeq: NR_120581,

ENA: KP742344.2:1..1395:ncRNA,

URS0001BE203A_9606 lncRNA 1387 1

LncBook: HSALNT0183231,

URS0000D59B2B_9606 lncRNA 1385 1

LNCipedia: lnc-FLI1-2:2,

ETS1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ETS1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ETS1-AS1 Gene

No ASD Table

Relevant External Links for ETS1-AS1 Gene

GeneLoc Exon Structure for
ETS1-AS1

Expression for ETS1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ETS1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ETS1-AS1 Gene

Orthologs for ETS1-AS1 Gene

Evolution for ETS1-AS1 Gene

ENSEMBL:
Gene Tree for ETS1-AS1 (if available)
TreeFam:
Gene Tree for ETS1-AS1 (if available)

No data available for Orthologs for ETS1-AS1 Gene

Paralogs for ETS1-AS1 Gene

No data available for Paralogs for ETS1-AS1 Gene

Variants for ETS1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ETS1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ETS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ETS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ETS1-AS1 Gene

Disorders for ETS1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ETS1-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ETS1-AS1

genes like me logo Genes that share disorders with ETS1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ETS1-AS1 Gene

Publications for ETS1-AS1 Gene

  1. Ets-1 promoter-associated noncoding RNA regulates the NONO/ERG/Ets-1 axis to drive gastric cancer progression. (PMID: 29773901) Li D … Tong Q (Oncogene 2018) 2 3
  2. Long Noncoding RNA pancEts-1 Promotes Neuroblastoma Progression through hnRNPK-Mediated β-Catenin Stabilization. (PMID: 29311158) Li D … Tong Q (Cancer research 2018) 3 74

Products for ETS1-AS1 Gene

Sources for ETS1-AS1 Gene