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Aliases for ESD Gene

Aliases for ESD Gene

  • Esterase D 2 3 4 5
  • Methylumbelliferyl-Acetate Deacetylase 3 4
  • Esterase D/Formylglutathione Hydrolase 2 3
  • S-Formylglutathione Hydrolase 2 3
  • FGH 3 4
  • Testicular Tissue Protein Li 66 3
  • Esterase 10 3
  • EC 3.1.2.12 4
  • EC 3.1.1.56 4

External Ids for ESD Gene

Previous GeneCards Identifiers for ESD Gene

  • GC13M045345
  • GC13M041332
  • GC13M046282
  • GC13M045143
  • GC13M046243
  • GC13M047345
  • GC13M028138

Summaries for ESD Gene

Entrez Gene Summary for ESD Gene

  • This gene encodes a serine hydrolase that belongs to the esterase D family. The encoded enzyme is active toward numerous substrates including O-acetylated sialic acids, and it may be involved in the recycling of sialic acids. This gene is used as a genetic marker for retinoblastoma and Wilson's disease. [provided by RefSeq, Feb 2009]

GeneCards Summary for ESD Gene

ESD (Esterase D) is a Protein Coding gene. Diseases associated with ESD include Wilson Disease. Among its related pathways are Phase I biotransformations, non P450 and Metabolism. Gene Ontology (GO) annotations related to this gene include serine-type peptidase activity and hydrolase activity, acting on ester bonds.

UniProtKB/Swiss-Prot for ESD Gene

  • Serine hydrolase involved in the detoxification of formaldehyde.

Gene Wiki entry for ESD Gene

Additional gene information for ESD Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ESD Gene

Genomics for ESD Gene

GeneHancer (GH) Regulatory Elements for ESD Gene

Promoters and enhancers for ESD Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046795 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 657.3 +0.4 443 2.5 HDGF CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ESD LRCH1 HTR2A GC13P046789
GH13J046638 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.4 +156.9 156856 4.2 HDGF PKNOX1 SMAD1 BMI1 FEZF1 BATF IRF4 ZSCAN5C ATF7 FOS LRCH1 ESD RUBCNL GC13P046617 ENSG00000278462
GH13J046751 Enhancer 0.9 Ensembl ENCODE 10.3 +45.7 45696 0.8 CTCF BACH1 MAX EBF1 BMI1 RAD21 POLR2A ATF7 IKZF2 RUNX3 ESD ENSG00000278462 GC13P046789 LRCH1
GH13J046199 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.2 +597.5 597521 1.5 SREBF1 MEIS2 ZZZ3 SPI1 RCN1P2 COG3 ESD RNU2-6P LRRC63 LCP1 LOC105370192
GH13J046759 Enhancer 0.6 ENCODE 11.1 +37.6 37640 0.2 FOXA2 ZNF362 RXRA REST RAD21 GABPA SP1 GATA3 JUND ATF3 ESD LRCH1 HTR2A GC13P046789 ENSG00000278462
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ESD on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ESD gene promoter:
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4
  • Msx-1
  • HNF-1
  • HNF-1A

Genomic Locations for ESD Gene

Genomic Locations for ESD Gene
chr13:46,771,256-46,797,681
(GRCh38/hg38)
Size:
26,426 bases
Orientation:
Minus strand
chr13:47,345,391-47,371,367
(GRCh37/hg19)
Size:
25,977 bases
Orientation:
Minus strand

Genomic View for ESD Gene

Genes around ESD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ESD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ESD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ESD Gene

Proteins for ESD Gene

  • Protein details for ESD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P10768-ESTD_HUMAN
    Recommended name:
    S-formylglutathione hydrolase
    Protein Accession:
    P10768
    Secondary Accessions:
    • Q5TBU8
    • Q5TBV0
    • Q5TBV2
    • Q9BVJ2

    Protein attributes for ESD Gene

    Size:
    282 amino acids
    Molecular mass:
    31463 Da
    Quaternary structure:
    • Homodimer.
    SequenceCaution:
    • Sequence=CAI12225.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI12226.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ESD Gene

neXtProt entry for ESD Gene

Post-translational modifications for ESD Gene

  • Ubiquitination at isoforms=209, isoforms=198, isoforms=167, isoforms=17, and isoforms=10
  • Modification sites at PhosphoSitePlus

Other Protein References for ESD Gene

No data available for DME Specific Peptides for ESD Gene

Domains & Families for ESD Gene

Gene Families for ESD Gene

Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for ESD Gene

Suggested Antigen Peptide Sequences for ESD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P10768

UniProtKB/Swiss-Prot:

ESTD_HUMAN :
  • Belongs to the esterase D family.
Family:
  • Belongs to the esterase D family.
genes like me logo Genes that share domains with ESD: view

Function for ESD Gene

Molecular function for ESD Gene

UniProtKB/Swiss-Prot Function:
Serine hydrolase involved in the detoxification of formaldehyde.
UniProtKB/Swiss-Prot CatalyticActivity:
S-formylglutathione + H(2)O = glutathione + formate.
UniProtKB/Swiss-Prot CatalyticActivity:
4-methylumbelliferyl acetate + H(2)O = 4-methylumbelliferone + acetate.
GENATLAS Biochemistry:
esterase D

Enzyme Numbers (IUBMB) for ESD Gene

Phenotypes From GWAS Catalog for ESD Gene

Gene Ontology (GO) - Molecular Function for ESD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0016787 hydrolase activity IEA --
GO:0016788 hydrolase activity, acting on ester bonds IDA 19126594
GO:0018738 S-formylglutathione hydrolase activity IEA,TAS --
GO:0042802 identical protein binding IPI 25416956
genes like me logo Genes that share ontologies with ESD: view
genes like me logo Genes that share phenotypes with ESD: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ESD

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ESD Gene

Localization for ESD Gene

Subcellular locations from UniProtKB/Swiss-Prot for ESD Gene

Cytoplasm. Cytoplasmic vesicle.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ESD gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 4
cytosol 4
nucleus 3
plasma membrane 2
golgi apparatus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Golgi apparatus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ESD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005788 endoplasmic reticulum lumen TAS --
GO:0005829 cytosol IBA --
GO:0031410 cytoplasmic vesicle IEA --
GO:0070062 extracellular exosome HDA 19056867
genes like me logo Genes that share ontologies with ESD: view

Pathways & Interactions for ESD Gene

genes like me logo Genes that share pathways with ESD: view

Pathways by source for ESD Gene

1 KEGG pathway for ESD Gene

Gene Ontology (GO) - Biological Process for ESD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0046294 formaldehyde catabolic process IEA --
GO:1901687 glutathione derivative biosynthetic process TAS --
genes like me logo Genes that share ontologies with ESD: view

No data available for SIGNOR curated interactions for ESD Gene

Drugs & Compounds for ESD Gene

(26) Drugs for ESD Gene - From: DrugBank, ClinicalTrials, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Glutathione Approved, Investigational Nutra Target 0
Budesonide Approved Pharma Anti-inflammatory corticosteroid 450
Epinephrine Approved, Vet_approved Pharma 1095
Menthol Approved Pharma Partial agonist, Activator 3047
Racepinephrine Approved Pharma 1095

(10) Additional Compounds for ESD Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
S-formylglutathione
  • N-(S-(Formyl-N-L-gamma-glutamyl)-L-cysteinyl)glycine
  • N-(S-(Formyl-N-L-g-glutamyl)-L-cysteinyl)glycine
  • N-(S-(Formyl-N-L-γ-glutamyl)-L-cysteinyl)glycine
50409-81-9
4-methylumbelliferone
  • 4-Methyl-7-hydroxycoumarin
  • 4-MU
  • 7-Hydroxy-4-methyl-2-oxo-2H-1-benzopyran
  • 7-Hydroxy-4-methyl-2-oxo-3-chromene
  • 7-Hydroxy-4-methyl-2H-1-benzopyran-2-one
4-Methylumbelliferyl acetate
  • 4-Methyl-7-acetyloxy coumarin
  • 7-(Acetyloxy)-4-methyl-2-benzopyrone
  • 7-(Acetyloxy)-4-methyl-2H-1-benzopyran-2-one
  • 7-Acetoxy-4-methylchromen-2-one
  • 7-Acetoxy-4-methylcoumarin
2747-05-9
genes like me logo Genes that share compounds with ESD: view

Transcripts for ESD Gene

mRNA/cDNA for ESD Gene

Unigene Clusters for ESD Gene

Esterase D:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ESD

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ESD Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b
SP1: - - -
SP2: - - - -
SP3: -
SP4: -
SP5:

Relevant External Links for ESD Gene

GeneLoc Exon Structure for
ESD
ECgene alternative splicing isoforms for
ESD

Expression for ESD Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ESD Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ESD Gene



Protein tissue co-expression partners for ESD Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ESD Gene:

ESD

SOURCE GeneReport for Unigene cluster for ESD Gene:

Hs.432491

Evidence on tissue expression from TISSUES for ESD Gene

  • Nervous system(4.8)
  • Liver(4.4)
  • Muscle(4.4)
  • Blood(2.5)
  • Lung(2.5)
  • Eye(2.2)
genes like me logo Genes that share expression patterns with ESD: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ESD Gene

Orthologs for ESD Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ESD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ESD 34 33
  • 99.29 (n)
OneToOne
dog
(Canis familiaris)
Mammalia ESD 34 33
  • 92.67 (n)
OneToOne
cow
(Bos Taurus)
Mammalia ESD 34 33
  • 90.31 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ESD 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ESD 34
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Esd 34 33
  • 87.23 (n)
OneToOne
Esd-ps 16
rat
(Rattus norvegicus)
Mammalia Esd 33
  • 87.12 (n)
chicken
(Gallus gallus)
Aves ESD 34 33
  • 80.02 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ESD 34
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia esd 33
  • 75.65 (n)
Str.11945 33
zebrafish
(Danio rerio)
Actinopterygii esd 34 33
  • 72.7 (n)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002627 33
  • 57.35 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG4390 34 35 33
  • 57.09 (n)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y48G10A.1 34 33
  • 56.88 (n)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL156W 33
  • 50.96 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F01947g 33
  • 50.72 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YJL068C 33
  • 48.62 (n)
-- 34
  • 38 (a)
OneToOne
-- 36
thale cress
(Arabidopsis thaliana)
eudicotyledons SFGH 33
  • 57.49 (n)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7071 33
rice
(Oryza sativa)
Liliopsida Os01g0939700 33
  • 57.91 (n)
corn
(Zea mays)
Liliopsida Zm.3730 33
barley
(Hordeum vulgare)
Liliopsida Hv.2989 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1047 34
  • 61 (a)
OneToOne
Cin.5019 33
bread mold
(Neurospora crassa)
Ascomycetes NCU00173 33
  • 51.67 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5019 33
Species where no ortholog for ESD was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ESD Gene

ENSEMBL:
Gene Tree for ESD (if available)
TreeFam:
Gene Tree for ESD (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ESD: view image

Paralogs for ESD Gene

Pseudogenes.org Pseudogenes for ESD Gene

genes like me logo Genes that share paralogs with ESD: view

No data available for Paralogs for ESD Gene

Variants for ESD Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for ESD Gene

ESTD_HUMAN-P10768
There are two major electrophoretic isotypes. The sequence of the ESD*1 variant is shown (PubMed:12721789, PubMed:7907313).

Sequence variations from dbSNP and Humsavar for ESD Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000401908 -- 46,791,434(-) G/C intron_variant
rs1000408001 -- 46,798,723(-) A/G upstream_transcript_variant
rs1000455072 -- 46,784,546(-) C/T 5_prime_UTR_variant, intron_variant
rs1000465190 -- 46,798,099(-) G/A upstream_transcript_variant
rs1000526282 -- 46,784,187(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ESD Gene

Variant ID Type Subtype PubMed ID
esv2763019 CNV loss 21179565
esv3892341 CNV gain 25118596

Variation tolerance for ESD Gene

Residual Variation Intolerance Score: 56.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.59; 86.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ESD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ESD

SNP Genotyping and Copy Number Assay Products

Disorders for ESD Gene

MalaCards: The human disease database

(1) MalaCards diseases for ESD Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
wilson disease
  • wnd; wd
- elite association - COSMIC cancer census association via MalaCards
Search ESD in MalaCards View complete list of genes associated with diseases

Additional Disease Information for ESD

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with ESD: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ESD Gene

Publications for ESD Gene

  1. Crystal structure of human esterase D: a potential genetic marker of retinoblastoma. (PMID: 19126594) Wu D … Liu ZJ (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2009) 3 4 22 58
  2. [Genetic polymorphism of erythrocytic enzymes in Yakut populations]. (PMID: 11963573) Tarskaia LA … Spitsin VA (Genetika 2002) 3 22 44 58
  3. [Genetic predisposition to development of toxic liver cirrhosis caused by alcohol]. (PMID: 11436564) Spitsyn VA … Afanas'eva IS (Genetika 2001) 3 22 44 58
  4. Molecular analysis of esterase D polymorphism. (PMID: 7907313) Tsuchida S … Ikemoto S (Human genetics 1994) 3 4 22 58
  5. Association study between single-nucleotide polymorphisms in 199 drug-related genes and commonly measured quantitative traits of 752 healthy Japanese subjects. (PMID: 19343046) Saito A … Kamatani N (Journal of human genetics 2009) 3 44 58

Products for ESD Gene

Sources for ESD Gene

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