Aliases for ERVK3-1 Gene

Subcategory (RNA class) for ERVK3-1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ERVK3-1 Gene

  • Endogenous Retrovirus Group K3 Member 1 2 3 5 13
  • HERV-K(HML6-1) 2 3
  • Endogenous Retrovirus Group K3, Member 1 2
  • CDNA FLJ30306 Fis, Clone BRACE2003319 13
  • HCG2043597, Isoform CRA_b 13
  • HCG2043597, Isoform CRA_a 13
  • LOC113386 Protein 13
  • NONHSAG026716.2 91
  • HSALNG0127945 164
  • Lnc-ZNF8-4 165
  • ERVK3-1 5

External Ids for ERVK3-1 Gene

Previous GeneCards Identifiers for ERVK3-1 Gene

  • GC19P058818
  • GC19P058280

Summaries for ERVK3-1 Gene

GeneCards Summary for ERVK3-1 Gene

ERVK3-1 (Endogenous Retrovirus Group K3 Member 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ERVK3-1 Gene

Genomics for ERVK3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ERVK3-1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ERVK3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ERVK3-1 Gene

Genomic Locations for ERVK3-1 Gene
chr19:58,305,319-58,315,663
(GRCh38/hg38)
Size:
10,345 bases
Orientation:
Plus strand
chr19:58,816,715-58,827,023
(GRCh37/hg19)
Size:
10,309 bases
Orientation:
Plus strand

Genomic View for ERVK3-1 Gene

Genes around ERVK3-1 on UCSC Golden Path with GeneCards custom track
ERVK3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ERVK3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ERVK3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERVK3-1 Gene

Proteins for ERVK3-1 Gene

  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q96A10-Q96A10_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    Q96A10

    Protein attributes for ERVK3-1 Gene

    Size:
    74 amino acids
    Molecular mass:
    7865 Da
    Quaternary structure:
    No Data Available
  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    B3KNS4-B3KNS4_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    B3KNS4

    Protein attributes for ERVK3-1 Gene

    Size:
    109 amino acids
    Molecular mass:
    11601 Da
    Quaternary structure:
    No Data Available
  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQN3-A0A0U1RQN3_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    A0A0U1RQN3

    Protein attributes for ERVK3-1 Gene

    Size:
    85 amino acids
    Molecular mass:
    9311 Da
    Quaternary structure:
    No Data Available
  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQL9-A0A0U1RQL9_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    A0A0U1RQL9

    Protein attributes for ERVK3-1 Gene

    Size:
    79 amino acids
    Molecular mass:
    8675 Da
    Quaternary structure:
    No Data Available
  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQS5-A0A0U1RQS5_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    A0A0U1RQS5

    Protein attributes for ERVK3-1 Gene

    Size:
    98 amino acids
    Molecular mass:
    10604 Da
    Quaternary structure:
    No Data Available
  • Protein details for ERVK3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQV1-A0A0U1RQV1_HUMAN
    Recommended name:
    Endogenous retrovirus group K3 member 1
    Protein Accession:
    A0A0U1RQV1

    Protein attributes for ERVK3-1 Gene

    Size:
    116 amino acids
    Molecular mass:
    12462 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ERVK3-1 Gene

Post-translational modifications for ERVK3-1 Gene

No Post-translational modifications

Other Protein References for ERVK3-1 Gene

No data available for DME Specific Peptides for ERVK3-1 Gene

Domains & Families for ERVK3-1 Gene

Gene Families for ERVK3-1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ERVK3-1 Gene

ProtoNet:
genes like me logo Genes that share domains with ERVK3-1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ERVK3-1 Gene

Function for ERVK3-1 Gene

Phenotypes From GWAS Catalog for ERVK3-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ERVK3-1 Gene

Localization for ERVK3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ERVK3-1 Gene

Pathways & Interactions for ERVK3-1 Gene

PathCards logo

SuperPathways for ERVK3-1 Gene

No Data Available

Interacting Proteins for ERVK3-1 Gene

Selected Interacting proteins: Q96A10-Q96A10_HUMAN for ERVK3-1 Gene via UniProtKB

Symbol External ID(s) Details
BAG4
  • EBI-10486892, EBI-2949658

Gene Ontology (GO) - Biological Process for ERVK3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ERVK3-1 Gene

Drugs & Compounds for ERVK3-1 Gene

No Compound Related Data Available

Transcripts for ERVK3-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ERVK3-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76F36_9606 lncRNA 1408 1

RefSeq: NR_144445,

URS00009B2125_9606 lncRNA 1118 2

LncBook: HSALNT0263051,

NONCODE: NONHSAT180006.1,

URS00009C268B_9606 lncRNA 988 2

LncBook: HSALNT0263046,

NONCODE: NONHSAT068351.2,

URS00009BBB12_9606 lncRNA 616 2

LNCipedia: lnc-ZNF8-4:3,

NONCODE: NONHSAT068350.2,

URS00009B1372_9606 lncRNA 479 2

LncBook: HSALNT0263047,

NONCODE: NONHSAT068352.2,

ERVK3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ERVK3-1 Gene

4 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ERVK3-1 Gene

No ASD Table

Relevant External Links for ERVK3-1 Gene

GeneLoc Exon Structure for
ERVK3-1

Expression for ERVK3-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ERVK3-1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ERVK3-1

genes like me logo Genes that share expression patterns with ERVK3-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ERVK3-1 Gene

Orthologs for ERVK3-1 Gene

Evolution for ERVK3-1 Gene

ENSEMBL:
Gene Tree for ERVK3-1 (if available)
TreeFam:
Gene Tree for ERVK3-1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ERVK3-1: view image

No data available for Orthologs for ERVK3-1 Gene

Paralogs for ERVK3-1 Gene

No data available for Paralogs for ERVK3-1 Gene

Variants for ERVK3-1 Gene

Additional dbSNP identifiers (rs#s) for ERVK3-1 Gene

Additional Variant Information for ERVK3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ERVK3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ERVK3-1 Gene

Disorders for ERVK3-1 Gene

No disorders were found for ERVK3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ERVK3-1 Gene

Publications for ERVK3-1 Gene

  1. A revised nomenclature for transcribed human endogenous retroviral loci. (PMID: 21542922) Mayer J … Seal RL (Mobile DNA 2011) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 13
  3. Expression analyses of human endogenous retroviruses (HERVs): tissue-specific and developmental stage-dependent expression of HERVs. (PMID: 15533715) Okahara G … Kanaya F (Genomics 2004) 2 3
  4. An inter-species protein-protein interaction network across vast evolutionary distance. (PMID: 27107014) Zhong Q … Vidal M (Molecular systems biology 2016) 3
  5. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta GD … Pelletier L (Cell 2015) 3

Products for ERVK3-1 Gene

Sources for ERVK3-1 Gene