Aliases for ERLNC1 Gene

Subcategory (RNA class) for ERLNC1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ERLNC1 Gene

  • Estrogen Receptor Responsive LncRNA 1 2 3 5
  • Oestrogen-Induced Long Non-Coding RNA-1 2 3
  • NONHSAG004015 94
  • HSALNG0009856 169
  • TC0101441 3
  • ElncRNA1 3
  • ERLNC1 2

External Ids for ERLNC1 Gene

Summaries for ERLNC1 Gene

GeneCards Summary for ERLNC1 Gene

ERLNC1 (Estrogen Receptor Responsive LncRNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ERLNC1 include Ovarian Epithelial Cancer and Ovarian Cancer.

Additional gene information for ERLNC1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ERLNC1 Gene

Genomics for ERLNC1 Gene

GeneHancer (GH) Regulatory Elements for ERLNC1 Gene

Promoters and enhancers for ERLNC1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J204143 Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 +0.9 897 1 FOXA1 MLX NR2F6 CREB1 MIXL1 SP1 CEBPG ZNF644 CEBPA RXRA ERLNC1 lnc-REN-2 ETNK2
GH01J204142 Enhancer 0.5 ENCODE dbSUPER 750.6 +2.0 1997 1.1 YY1 HNF4A ERLNC1 lnc-REN-2 ETNK2
GH01J204361 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 +221.7 221680 3.9 ZBTB40 CTCF SMARCE1 CC2D1A ETV6 ELF1 L3MBTL2 MAX RAD21 MNT lnc-MDM4-10 ZC3H11A MDM4 PPP1R15B ENSG00000231691 SNRPE GOLT1A ETNK2 ERLNC1 PLEKHA6
GH01J204376 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 10.6 +238.4 238390 6.8 GATA3 SMARCE1 POLR2A TCF7L2 USF2 NR2F6 ZNF217 L3MBTL2 RAD21 MAX ENSG00000226330 PLEKHA6 lnc-PLEKHA6-1 PPP1R15B ENSG00000231691 ETNK2 ERLNC1 PIK3C2B GOLT1A SOX13
GH01J204285 Promoter/Enhancer 1.8 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.2 +146.2 146247 4.3 SIN3A GATA3 USF2 ZNF217 ZNF362 NFYC ELF1 L3MBTL2 MAX RAD21 PLEKHA6 HSALNG0009867 GOLT1A ETNK2 ERLNC1 PIK3C2B AB372599
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ERLNC1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ERLNC1 Gene

Genomic Locations for ERLNC1 Gene
chr1:204,141,404-204,143,327
(GRCh38/hg38)
Size:
1,924 bases
Orientation:
Plus strand
chr1:204,110,536-204,112,137
(GRCh37/hg19)
Size:
1,602 bases
Orientation:
Plus strand

Genomic View for ERLNC1 Gene

Genes around ERLNC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ERLNC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ERLNC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERLNC1 Gene

Proteins for ERLNC1 Gene

Post-translational modifications for ERLNC1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ERLNC1 Gene

Domains & Families for ERLNC1 Gene

Gene Families for ERLNC1 Gene

genes like me logo Genes that share domains with ERLNC1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ERLNC1 Gene

Function for ERLNC1 Gene

Phenotypes From GWAS Catalog for ERLNC1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ERLNC1 Gene

Localization for ERLNC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ERLNC1 Gene

Pathways & Interactions for ERLNC1 Gene

PathCards logo

SuperPathways for ERLNC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ERLNC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ERLNC1 Gene

Drugs & Compounds for ERLNC1 Gene

No Compound Related Data Available

Transcripts for ERLNC1 Gene

mRNA/cDNA for ERLNC1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ERLNC1 Gene

No ASD Table

Relevant External Links for ERLNC1 Gene

GeneLoc Exon Structure for
ERLNC1
ECgene alternative splicing isoforms for
ERLNC1

Expression for ERLNC1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ERLNC1 Gene

Orthologs for ERLNC1 Gene

Evolution for ERLNC1 Gene

ENSEMBL:
Gene Tree for ERLNC1 (if available)
TreeFam:
Gene Tree for ERLNC1 (if available)

No data available for Orthologs for ERLNC1 Gene

Paralogs for ERLNC1 Gene

No data available for Paralogs for ERLNC1 Gene

Variants for ERLNC1 Gene

Sequence variations from dbSNP and Humsavar for ERLNC1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000816405 -- 204,142,340(+) C/A intron_variant
rs1001097975 -- 204,143,291(+) C/T downstream_transcript_variant
rs1001107400 -- 204,142,359(+) C/T intron_variant
rs1001281648 -- 204,141,717(+) T/A/C non_coding_transcript_variant
rs1001762417 -- 204,140,615(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ERLNC1 Gene

Variant ID Type Subtype PubMed ID
esv2762138 CNV gain 21179565

Additional Variant Information for ERLNC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ERLNC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ERLNC1 Gene

Disorders for ERLNC1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ERLNC1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
ovarian epithelial cancer
  • eoc
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ERLNC1

genes like me logo Genes that share disorders with ERLNC1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ERLNC1 Gene

Publications for ERLNC1 Gene

  1. ElncRNA1, a long non-coding RNA that is transcriptionally induced by oestrogen, promotes epithelial ovarian cancer cell proliferation. (PMID: 28714515) Qiu JJ … Hua KQ (International journal of oncology 2017) 2 3 56
  2. Effects of oestrogen on long noncoding RNA expression in oestrogen receptor alpha-positive ovarian cancer cells. (PMID: 24380700) Qiu J … Hua K (The Journal of steroid biochemistry and molecular biology 2014) 2 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for ERLNC1 Gene

Sources for ERLNC1 Gene