Aliases for ERI3-IT1 Gene

Subcategory (RNA class) for ERI3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ERI3-IT1 Gene

  • ERI3 Intronic Transcript 1 2 3 5
  • ERI3-IT1 2 5 165
  • ERI3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG001268.2 91
  • HSALNG0003165 164

External Ids for ERI3-IT1 Gene

Previous GeneCards Identifiers for ERI3-IT1 Gene

  • GC00U933738
  • GC01M044710

Summaries for ERI3-IT1 Gene

GeneCards Summary for ERI3-IT1 Gene

ERI3-IT1 (ERI3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ERI3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ERI3-IT1 Gene

Genomics for ERI3-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ERI3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J044257 Enhancer 0.3 Ensembl 600.7 -0.8 -780 0.6 GATA2 ERI3-IT1 DMAP1 ERI3 lnc-DMAP1-1
GH01J044255 Enhancer 0.2 Ensembl 600.7 +1.8 1820 0.2 ERI3-IT1 DMAP1 ERI3 SNORA110
GH01J044325 Enhancer 1.5 UCNEbase Ensembl ENCODE 10.3 -71.1 -71080 4.8 CEBPG PRDM10 ZNF629 SOX13 ZNF692 ZNF174 TARDBP ZHX2 ZNF300 FOXA1 ZSWIM5 SZT2 ENSG00000237950 HYI ARTN DMAP1 ERI3 ERI3-IT1 PTCH2 lnc-KLF18-11
GH01J044596 Enhancer 0.4 dbSUPER 5 -340.2 -340221 1.7 ZSCAN4 ZNF366 ZNF398 ERI3-IT1 lnc-C1orf228-4 HSALNG0003182 TMEM53 RNF220
GH01J044261 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.3 -8322 8.9 PRDM10 PRDM1 ZIC2 ZNF501 ZNF600 ZNF341 ZNF561 ZBTB44 ZBTB20 KLF7 DMAP1 ERI3 DPH2 SZT2 ATP6V0B ERI3-IT1 lnc-DMAP1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ERI3-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ERI3-IT1 Gene

Genomic Locations for ERI3-IT1 Gene
chr1:44,221,429-44,256,921
(GRCh38/hg38)
Size:
35,493 bases
Orientation:
Minus strand
chr1:44,709,080-44,709,945
(GRCh37/hg19)
Size:
866 bases
Orientation:
Minus strand

Genomic View for ERI3-IT1 Gene

Genes around ERI3-IT1 on UCSC Golden Path with GeneCards custom track
ERI3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ERI3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ERI3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERI3-IT1 Gene

Proteins for ERI3-IT1 Gene

Post-translational modifications for ERI3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ERI3-IT1 Gene

Domains & Families for ERI3-IT1 Gene

Gene Families for ERI3-IT1 Gene

genes like me logo Genes that share domains with ERI3-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ERI3-IT1 Gene

Function for ERI3-IT1 Gene

Phenotypes From GWAS Catalog for ERI3-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ERI3-IT1 Gene

Localization for ERI3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ERI3-IT1 Gene

Pathways & Interactions for ERI3-IT1 Gene

PathCards logo

SuperPathways for ERI3-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ERI3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ERI3-IT1 Gene

Drugs & Compounds for ERI3-IT1 Gene

No Compound Related Data Available

Transcripts for ERI3-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ERI3-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D945_9606 lncRNA 661 4

HGNC: 41431,

RefSeq: NR_046817,

LncBook: HSALNT0006075,

LNCipedia: ERI3-IT1:5,

URS000018328F_9606 lncRNA 619 4

Ensembl: ENST00000414156 (view in UCSC) ,

LncBook: HSALNT0006077,

LNCipedia: ERI3-IT1:6,

NONCODE: NONHSAT002872.2,

URS0000759D81_9606 lncRNA 498 4

RefSeq: NR_110056,

LncBook: HSALNT0006073,

LNCipedia: ERI3-IT1:4,

NONCODE: NONHSAT151522.1,

URS00009C468A_9606 lncRNA 619 2

LncBook: HSALNT0006076,

NONCODE: NONHSAT151523.1,

URS00008C3D29_9606 lncRNA 394 2

LncBook: HSALNT0006069,

LNCipedia: ERI3-IT1:3,

ERI3-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ERI3-IT1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ERI3-IT1 Gene

No ASD Table

Relevant External Links for ERI3-IT1 Gene

GeneLoc Exon Structure for
ERI3-IT1

Expression for ERI3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ERI3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ERI3-IT1 Gene

This gene is overexpressed in Testis (x7.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ERI3-IT1

genes like me logo Genes that share expression patterns with ERI3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ERI3-IT1 Gene

Orthologs for ERI3-IT1 Gene

Evolution for ERI3-IT1 Gene

ENSEMBL:
Gene Tree for ERI3-IT1 (if available)
TreeFam:
Gene Tree for ERI3-IT1 (if available)

No data available for Orthologs for ERI3-IT1 Gene

Paralogs for ERI3-IT1 Gene

No data available for Paralogs for ERI3-IT1 Gene

Variants for ERI3-IT1 Gene

Additional dbSNP identifiers (rs#s) for ERI3-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ERI3-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3399053 CNV insertion 20981092
esv998002 CNV deletion 20482838
nsv508011 OTHER sequence alteration 20534489

Additional Variant Information for ERI3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ERI3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ERI3-IT1 Gene

Disorders for ERI3-IT1 Gene

Additional Disease Information for ERI3-IT1

No disorders were found for ERI3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ERI3-IT1 Gene

Publications for ERI3-IT1 Gene

No publications were found for ERI3-IT1 Gene.

No data available for Mastermind for ERI3-IT1 Gene

Products for ERI3-IT1 Gene

Sources for ERI3-IT1 Gene