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Aliases for ERI3-IT1 Gene

Subcategory (RNA class) for ERI3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ERI3-IT1 Gene

  • ERI3 Intronic Transcript 1 2 3 5
  • ERI3 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for ERI3-IT1 Gene

Previous GeneCards Identifiers for ERI3-IT1 Gene

  • GC00U933738
  • GC01M044710

Summaries for ERI3-IT1 Gene

GeneCards Summary for ERI3-IT1 Gene

ERI3-IT1 (ERI3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ERI3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ERI3-IT1 Gene

Genomics for ERI3-IT1 Gene

GeneHancer (GH) Regulatory Elements for ERI3-IT1 Gene

Promoters and enhancers for ERI3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J043945 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 +297.2 297245 2.7 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC MEF2D LOC101929609 IPO13 DMAP1 ARTN ATP6V0B CCDC24 SZT2 ERI3-IT1 HYI RNF220
GH01J044027 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.3 +213.8 213780 5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF766 ZNF207 ZNF143 ENSG00000230615 SLC6A9 SZT2 DMAP1 KDM4A MED8 ERI3-IT1 IPO13 DPH2 ARTN
GH01J043973 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.2 +269.0 269042 3 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ATP6V0B SZT2 CCDC24 DMAP1 ERI3-IT1 RPS8 LOC105378687 ST3GAL3 B4GALT2
GH01J044354 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.3 -110.9 -110893 1.6 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 E2F8 ERI3 DMAP1 TOE1 SZT2 MUTYH ERI3-IT1 KIF2C GC01P044305
GH01J044842 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.2 -598.9 -598931 1.5 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 GLIS2 ATF7 SP3 NFYC ZNF623 ENSG00000226499 PTCH2 TOE1 MUTYH DMAP1 NASP ARTN IPP ERI3-IT1 UROD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ERI3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ERI3-IT1 Gene

Genomic Locations for ERI3-IT1 Gene
chr1:44,222,595-44,244,283
(GRCh38/hg38)
Size:
21,689 bases
Orientation:
Minus strand
chr1:44,709,080-44,709,945
(GRCh37/hg19)
Size:
866 bases
Orientation:
Minus strand

Genomic View for ERI3-IT1 Gene

Genes around ERI3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ERI3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ERI3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERI3-IT1 Gene

Function for ERI3-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ERI3-IT1 Gene

Localization for ERI3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ERI3-IT1 Gene

Pathways & Interactions for ERI3-IT1 Gene

SuperPathways for ERI3-IT1 Gene

No Data Available

Interacting Proteins for ERI3-IT1 Gene

Gene Ontology (GO) - Biological Process for ERI3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ERI3-IT1 Gene

Drugs & Compounds for ERI3-IT1 Gene

No Compound Related Data Available

Transcripts for ERI3-IT1 Gene

mRNA/cDNA for ERI3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ERI3-IT1 Gene

No ASD Table

Relevant External Links for ERI3-IT1 Gene

GeneLoc Exon Structure for
ERI3-IT1
ECgene alternative splicing isoforms for
ERI3-IT1

Expression for ERI3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ERI3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ERI3-IT1 Gene

This gene is overexpressed in Testis (x7.7).
genes like me logo Genes that share expression patterns with ERI3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ERI3-IT1 Gene

Orthologs for ERI3-IT1 Gene

Evolution for ERI3-IT1 Gene

ENSEMBL:
Gene Tree for ERI3-IT1 (if available)
TreeFam:
Gene Tree for ERI3-IT1 (if available)

No data available for Orthologs for ERI3-IT1 Gene

Paralogs for ERI3-IT1 Gene

No data available for Paralogs for ERI3-IT1 Gene

Variants for ERI3-IT1 Gene

Sequence variations from dbSNP and Humsavar for ERI3-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000036743 -- 44,225,304(-) T/G genic_downstream_transcript_variant, intron_variant
rs1000152515 -- 44,225,592(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000300164 -- 44,244,961(-) A/G/T upstream_transcript_variant
rs1000384018 -- 44,231,940(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000422378 -- 44,238,297(-) A/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ERI3-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv508011 OTHER sequence alteration 20534489
esv998002 CNV deletion 20482838
esv3399053 CNV insertion 20981092

Additional Variant Information for ERI3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ERI3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ERI3-IT1 Gene

Disorders for ERI3-IT1 Gene

Additional Disease Information for ERI3-IT1

No disorders were found for ERI3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ERI3-IT1 Gene

Publications for ERI3-IT1 Gene

No publications were found for ERI3-IT1 Gene.

Products for ERI3-IT1 Gene

Sources for ERI3-IT1 Gene

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