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Aliases for ERC2-IT1 Gene

Subcategory (RNA class) for ERC2-IT1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ERC2-IT1 Gene

  • ERC2 Intronic Transcript 1 2 3 5
  • ERC2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C3orf51 3 4
  • C1orf1 3 4
  • ERC2 Intronic Transcript Protein 1 4
  • Chromosome 3 Open Reading Frame 51 2
  • Chromosome 1 Open Reading Frame 1 2
  • Po42 3
  • PO42 4

External Ids for ERC2-IT1 Gene

ORGUL Members for ERC2-IT1 Gene

Previous HGNC Symbols for ERC2-IT1 Gene

  • C1orf1
  • C3orf51

Summaries for ERC2-IT1 Gene

Entrez Gene Summary for ERC2-IT1 Gene

  • This gene is a putative tumor suppressor gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ERC2-IT1 Gene

ERC2-IT1 (ERC2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ERC2-IT1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ERC2-IT1 Gene

Genomics for ERC2-IT1 Gene

GeneHancer (GH) Regulatory Elements for ERC2-IT1 Gene

Promoters and enhancers for ERC2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J055659 Enhancer 0.5 ENCODE dbSUPER 650.7 +0.3 327 0.1 CTBP2 ERC2-IT1 GC03P055654 ERC2
GH03J055673 Enhancer 0.7 dbSUPER 0.4 -15.8 -15832 3.8 EBF1 BATF IRF4 RELA EED ZNF143 ATF7 BCLAF1 IKZF2 RUNX3 ERC2-IT1 GC03P055654 GC03M055710 ERC2
GH03J055686 Enhancer 0.5 dbSUPER 0.3 -28.6 -28553 3.7 EED NFE2 FOS BATF RUNX3 ERC2-IT1 GC03M055710 GC03P055654 ERC2
GH03J055690 Enhancer 0.5 ENCODE 0.3 -31.6 -31595 0.6 POLR2A MZF1 EBF1 RUNX3 GC03M055710 ERC2-IT1 GC03P055654 ERC2
GH03J055664 Enhancer 0.3 ENCODE 0.4 -5.1 -5059 0.2 EZH2 ERC2-IT1 GC03P055654 GC03M055710 ERC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ERC2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ERC2-IT1 Gene

Genomic Locations for ERC2-IT1 Gene
chr3:55,657,206-55,659,469
(GRCh38/hg38)
Size:
2,264 bases
Orientation:
Minus strand
chr3:55,691,234-55,693,497
(GRCh37/hg19)
Size:
2,264 bases
Orientation:
Minus strand

Genomic View for ERC2-IT1 Gene

Genes around ERC2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ERC2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ERC2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERC2-IT1 Gene

Proteins for ERC2-IT1 Gene

  • Protein details for ERC2-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O76042-ERIT1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by ERC2-IT1
    Protein Accession:
    O76042
    Secondary Accessions:
    • Q6NT35

    Protein attributes for ERC2-IT1 Gene

    Size:
    136 amino acids
    Molecular mass:
    14968 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC39932.1; Type=Frameshift; Positions=86, 111; Evidence={ECO:0000305};

neXtProt entry for ERC2-IT1 Gene

Post-translational modifications for ERC2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ERC2-IT1 Gene

Domains & Families for ERC2-IT1 Gene

Protein Domains for ERC2-IT1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ERC2-IT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ERC2-IT1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ERC2-IT1 Gene

Function for ERC2-IT1 Gene

Phenotypes for ERC2-IT1 Gene

genes like me logo Genes that share phenotypes with ERC2-IT1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ERC2-IT1 Gene

Localization for ERC2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ERC2-IT1 Gene

Pathways & Interactions for ERC2-IT1 Gene

SuperPathways for ERC2-IT1 Gene

No Data Available

Interacting Proteins for ERC2-IT1 Gene

Gene Ontology (GO) - Biological Process for ERC2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ERC2-IT1 Gene

Drugs & Compounds for ERC2-IT1 Gene

No Compound Related Data Available

Transcripts for ERC2-IT1 Gene

mRNA/cDNA for ERC2-IT1 Gene

(6) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for ERC2-IT1 Gene

ERC2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ERC2-IT1 Gene

No ASD Table

Relevant External Links for ERC2-IT1 Gene

GeneLoc Exon Structure for
ERC2-IT1
ECgene alternative splicing isoforms for
ERC2-IT1

Expression for ERC2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ERC2-IT1 Gene

SOURCE GeneReport for Unigene cluster for ERC2-IT1 Gene:

Hs.667161

mRNA Expression by UniProt/SwissProt for ERC2-IT1 Gene:

O76042-ERIT1_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expression patterns with ERC2-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ERC2-IT1 Gene

Orthologs for ERC2-IT1 Gene

Evolution for ERC2-IT1 Gene

ENSEMBL:
Gene Tree for ERC2-IT1 (if available)
TreeFam:
Gene Tree for ERC2-IT1 (if available)

No data available for Orthologs for ERC2-IT1 Gene

Paralogs for ERC2-IT1 Gene

No data available for Paralogs for ERC2-IT1 Gene

Variants for ERC2-IT1 Gene

Sequence variations from dbSNP and Humsavar for ERC2-IT1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001268606 -- 55,656,954(-) T/G downstream_transcript_variant
rs1002754448 -- 55,660,542(-) A/C upstream_transcript_variant
rs1002943913 -- 55,658,701(-) A/G non_coding_transcript_variant
rs1004059663 -- 55,659,796(-) C/G upstream_transcript_variant
rs1004900818 -- 55,659,114(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ERC2-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv517851 CNV gain 19592680
nsv1013405 CNV gain 25217958

Additional Variant Information for ERC2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ERC2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ERC2-IT1 Gene

Disorders for ERC2-IT1 Gene

Additional Disease Information for ERC2-IT1

No disorders were found for ERC2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ERC2-IT1 Gene

Publications for ERC2-IT1 Gene

  1. Molecular cloning and expression analysis of five novel genes in chromosome 1p36. (PMID: 9653645) Onyango P … Weith A (Genomics 1998) 2 3 4 58
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ERC2-IT1 Gene

Sources for ERC2-IT1 Gene

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