Aliases for EPN2-IT1 Gene

Subcategory (RNA class) for EPN2-IT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for EPN2-IT1 Gene

  • EPN2 Intronic Transcript 1 2 3
  • EPN2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • EPN2-IT1 2 170
  • HSALNG0115108 169
  • NONHSAG021099 94

External Ids for EPN2-IT1 Gene

Previous GeneCards Identifiers for EPN2-IT1 Gene

  • GC00U933612
  • GC17P019175
  • GC17U901728
  • GC17P019271

Summaries for EPN2-IT1 Gene

GeneCards Summary for EPN2-IT1 Gene

EPN2-IT1 (EPN2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for EPN2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EPN2-IT1 Gene

Genomics for EPN2-IT1 Gene

GeneHancer (GH) Regulatory Elements for EPN2-IT1 Gene

Promoters and enhancers for EPN2-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EPN2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EPN2-IT1 Gene

Genomic Locations for EPN2-IT1 Gene
chr17:19,237,088-19,336,714
(GRCh38/hg38)
Size:
99,627 bases
Orientation:
Plus strand

Genomic View for EPN2-IT1 Gene

Genes around EPN2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EPN2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EPN2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EPN2-IT1 Gene

Proteins for EPN2-IT1 Gene

Post-translational modifications for EPN2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EPN2-IT1 Gene

Domains & Families for EPN2-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EPN2-IT1 Gene

Function for EPN2-IT1 Gene

Phenotypes From GWAS Catalog for EPN2-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EPN2-IT1 Gene

Localization for EPN2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EPN2-IT1 Gene

Pathways & Interactions for EPN2-IT1 Gene

PathCards logo

SuperPathways for EPN2-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EPN2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EPN2-IT1 Gene

Drugs & Compounds for EPN2-IT1 Gene

No Compound Related Data Available

Transcripts for EPN2-IT1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for EPN2-IT1 Gene

No ASD Table

Relevant External Links for EPN2-IT1 Gene

GeneLoc Exon Structure for
EPN2-IT1
ECgene alternative splicing isoforms for
EPN2-IT1

Expression for EPN2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EPN2-IT1 Gene

mRNA expression in normal human tissues for EPN2-IT1 Gene

SOURCE GeneReport for Unigene cluster for EPN2-IT1 Gene:

Hs.733657
genes like me logo Genes that share expression patterns with EPN2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EPN2-IT1 Gene

Orthologs for EPN2-IT1 Gene

No data available for Orthologs and Evolution for EPN2-IT1 Gene

Paralogs for EPN2-IT1 Gene

No data available for Paralogs for EPN2-IT1 Gene

Variants for EPN2-IT1 Gene

Sequence variations from dbSNP and Humsavar for EPN2-IT1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000797447 -- 19,271,158(+) GGGGGG/GGGGGGG upstream_transcript_variant
rs1001145441 -- 19,270,227(+) C/T upstream_transcript_variant
rs1001813946 -- 19,269,463(+) T/G upstream_transcript_variant
rs1002097427 -- 19,271,382(+) G/A/C upstream_transcript_variant
rs1002180367 -- 19,274,767(+) T/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for EPN2-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2758678 CNV gain+loss 17122850
esv33572 CNV gain 17666407
esv3582561 CNV loss 25503493
nsv1061317 CNV gain 25217958
nsv428336 CNV gain+loss 18775914
nsv833393 CNV gain+loss 17160897

Additional Variant Information for EPN2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EPN2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EPN2-IT1 Gene

Disorders for EPN2-IT1 Gene

Additional Disease Information for EPN2-IT1

No disorders were found for EPN2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EPN2-IT1 Gene

Publications for EPN2-IT1 Gene

No publications were found for EPN2-IT1 Gene.

Products for EPN2-IT1 Gene

Sources for EPN2-IT1 Gene